| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3106 |
|---|
| Symbol | aroE |
|---|
| ID | 3680852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 3862024 |
|---|
| End bp | 3862893 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637718450 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_323609 |
|---|
| Protein GI | 75909313 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.828808 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTACAG GCAAAACTAA ACTATTAGGG GTAATTGGAC ATCCGGTGGA ACATTCACTG
TCACCGGTGA TGCACAATGC AGCGATCGCC CAATTGGGAT TAGATTATGT ATATCTACCT
TTTCCTATAG CACCAGATAA TTTAGAAGCA GCGATCGCTC TTTTGGCTAC TATTGGTGTA
GTGGGATTTA GTGTGACGAT TCCTCACAAA CAGGCAATCA TCCCCCTGCT GGCTGAAATT
AGCCCCGTTG CTCAAGCTAT AGGCGCAGTA AATACTGTCA CCCGTCAAAA TAATCAATGG
GTGGGGACAA ACACAGATAT AGAAGGGTTT ATTGCCCCTT TGCAGACAAC ATATAAACGA
GATTGGAGTC AGCAAATCGC CGTAATCTTG GGTAATGGTG GCGCAGCGAG AGCTGTTGTC
GCAGGTTGTT ATCAACTGGG TTTTGCGGAA ATTCATGTAG TGGGGCGCAA TGTGCAACGC
CTAGAGGAAT TTCGCCACAG TTGGGACAAT TCCCCCATCG CTGAGAATTT ACAAGTACAT
ACCTGGGATT ATTTAGCAAA GCTCGTCCCT CAAGCTAACC TACTGGTGAA CACAACCCCG
ATAGGAATGT ATCCGCAGGT TGATGAGTCG CCTTTGAGTA CCGAAGAACT GGCGAATTTA
CAAACTGGTG CTATTGCTTA TGATTTGATA TATATTCCCA AACCAACGCA ATTTCTCCAA
AAAGCACAAC AACAAGGCGC AATTGCTATT GATGGTTTAG AAATGTTAGT TCAGCAAGGA
GTCGCCGCCT TAAAAATTTG GTTGCAGCAA GACGATATCC CTGTAGATGT GATGCGTCAA
GCATTACAAA AGCATCTTGG TTTGGTTTAA
|
|---|
| Protein sequence | MITGKTKLLG VIGHPVEHSL SPVMHNAAIA QLGLDYVYLP FPIAPDNLEA AIALLATIGV
VGFSVTIPHK QAIIPLLAEI SPVAQAIGAV NTVTRQNNQW VGTNTDIEGF IAPLQTTYKR
DWSQQIAVIL GNGGAARAVV AGCYQLGFAE IHVVGRNVQR LEEFRHSWDN SPIAENLQVH
TWDYLAKLVP QANLLVNTTP IGMYPQVDES PLSTEELANL QTGAIAYDLI YIPKPTQFLQ
KAQQQGAIAI DGLEMLVQQG VAALKIWLQQ DDIPVDVMRQ ALQKHLGLV
|
|---|
| |