Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_3088 |
Symbol | dapF |
ID | 3681010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 3838451 |
End bp | 3839299 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637718433 |
Product | diaminopimelate epimerase |
Protein accession | YP_323592 |
Protein GI | 75909296 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.233699 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGAAAAA TGGCAATCGA ATTTACTAAG TATCACGGTC TAGGCAACGA TTTTATTCTC ATCGATAATC GCGCTTCTAA AACGCCGGCA ATCACTCCAG AGAAAGCGGT GGAGATGTGC GATCGCCACT TTGGTATCGG TGCTGATGGT GTAATTTTTG CCTTACCTGG AGAAAACGGT ACTGATTACA CCATGCGGAT TTTTAATTCC GATGGTTCAG AACCGGAAAT GTGTGGTAAT GGTATTCGCT GTCTCGCTGC ATTTCTGGCT GATTTGGAAG GGCTTTCTCG TAATAAGGAT ACCTATCGTA TTCATACTTT AGCTGGTGTG ATTACCCCCC AACTCACCCC TGATGGACAA ATCAAGGTGG ATATGGGTTT ACCTCGGTTA CTAGCTGGGG AAATTCCGAC AAATATTGCT GCTGCTGATC AGAAAGTAAT TAACCAACCC CTAGAAGTAG AAGGGAAAAC TTGGGAAGTT ACTTGTGTCA GCATGGGGAA TCCCCACTGT ATTACTTTCG TGGAAGACGT GGCAGCGATT CCTTTAGAAA CCATCGGCCC TAAATTTGAA CATCACCCAG CTTTTCCTCA ACGGACAAAC ACCGAATTTA TTCAAGTTGT CAGCCGTGAT TACTTGAAGA TGCGTGTCTG GGAACGCGGT GCAGGAATTA CTTTAGCTTG TGGTACAGGT GCTTGTGCTT CCTTGGTAGC GGCGGTATTG ACTGGAAGAA GCGATCGCCT CGCTACTGTA GAATTGCCTG GTGGCCCTTT GGAAATTGAA TGGTCAGAAG TAGACCAAAG AATTTATATG ACCGGCCCAG CTGATAGGGT ATTCACAGGT AAACTGTGA
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Protein sequence | MGKMAIEFTK YHGLGNDFIL IDNRASKTPA ITPEKAVEMC DRHFGIGADG VIFALPGENG TDYTMRIFNS DGSEPEMCGN GIRCLAAFLA DLEGLSRNKD TYRIHTLAGV ITPQLTPDGQ IKVDMGLPRL LAGEIPTNIA AADQKVINQP LEVEGKTWEV TCVSMGNPHC ITFVEDVAAI PLETIGPKFE HHPAFPQRTN TEFIQVVSRD YLKMRVWERG AGITLACGTG ACASLVAAVL TGRSDRLATV ELPGGPLEIE WSEVDQRIYM TGPADRVFTG KL
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