Gene Ava_2980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_2980 
Symbol 
ID3681273 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp3697001 
End bp3697402 
Gene Length402 bp 
Protein Length133 aa 
Translation table11 
GC content40% 
IMG OID637718326 
ProductBeta-Ig-H3/fasciclin 
Protein accessionYP_323485 
Protein GI75909189 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2335] Secreted and surface protein containing fasciclin-like repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.231392 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGATA TTGTTGATAT TGCAGTTAGT GCAGATAGTT TTAAAACTCT GGTGACAGCT 
GTACAAGCTG CTGGTTTAGT AGAAACTTTA AAAAGTCCAG GGCCGTTTAC TGTTTTCGCA
CCAAACGACG ATGCTTTTGC TAAGTTACCC CCAGGAACTA TACAAACTTT GGTGCAGAAT
ATTCCCCAAT TAACGAGAAT ATTAACGTAT CATGTGGTAC CTGGCAAGCT GAAGCAGGCT
GATTTAGCAA AACTTGGCAC AGTTACATCC GTGGAAGGTT CACCGATTAA AATTGATTGT
GCTGATGGTT TTGAGGTGAA AAATGCCACA GTTTTAGCCG CAGATATTGA AGCAGATAAC
GGTATAATTC ACGTCATCGA TACTGTAATT CTGATGGGTT AA
 
Protein sequence
MADIVDIAVS ADSFKTLVTA VQAAGLVETL KSPGPFTVFA PNDDAFAKLP PGTIQTLVQN 
IPQLTRILTY HVVPGKLKQA DLAKLGTVTS VEGSPIKIDC ADGFEVKNAT VLAADIEADN
GIIHVIDTVI LMG