Gene Ava_2917 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_2917 
Symbol 
ID3681384 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp3623508 
End bp3624230 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content45% 
IMG OID637718263 
Productthymidylate synthase complementing protein ThyX 
Protein accessionYP_323423 
Protein GI75909127 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1351] Predicted alternative thymidylate synthase 
TIGRFAM ID[TIGR02170] thymidylate synthase, flavin-dependent 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.86154e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0185293 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCGAT TCCGAGTAGA AGTTATAGCT AAAACACCAA ACCCCCAGCA GGTGATTTAC 
GCCGCAATGC ACCAAGACTA TACTGATGGG TTCGTGTTTG ACGAGCGCGA CTCCTGGCCC
TCGGAGTCGG AATGTGGCGA CATTATTATT AAGCGCCTGT TAGCTGGGGA AAGAGGACAC
TATGGCCCGT TAGAGCATCC CCAGATTGTT TTCAACTGCG GCTATTTTCC CCACAGTGTT
ATGCAGCAGG CGCGTACACA TAGGGTTTCA GTATCATTTG ATGTACAATC TTTTAGGTAT
ACGGGTAACC AGTTTATTGA TGTAGTCGAA GGTAGAAAAG ACATTGAAGA TGTTTTTTAC
CTGCGTCCTG TTGGTTATTA CACAGATAGA CAGGGCAAAA AATATTACTA TTCTCCAGAA
CAAAGAGCCG CAGATTTGCA GTGGTGTTTA GAAGCAGCTA AACGTTACAA AGCTGATTTT
GAAGGGGGAA TGTCTGAAGA ACACGCACGA GGTAAAGTAC CCTTTGATTA TCGCCAGCAT
TTCGTCGTCA GCTTTAACCT GCGCTCATTT TTGCACTTTT GTGACTTACG CAATAAGAAA
GATGCACAAC TGGAAATTCA AAAGTTGTGT GAATTGATGT GGCCTCATTT TGCAGAGTGG
TCTCCGGCGA TCGCTCAATG GTATGAAAAA TCCCGTCTGG GTAGAGCCAG GCTATCACCA
TAA
 
Protein sequence
MDRFRVEVIA KTPNPQQVIY AAMHQDYTDG FVFDERDSWP SESECGDIII KRLLAGERGH 
YGPLEHPQIV FNCGYFPHSV MQQARTHRVS VSFDVQSFRY TGNQFIDVVE GRKDIEDVFY
LRPVGYYTDR QGKKYYYSPE QRAADLQWCL EAAKRYKADF EGGMSEEHAR GKVPFDYRQH
FVVSFNLRSF LHFCDLRNKK DAQLEIQKLC ELMWPHFAEW SPAIAQWYEK SRLGRARLSP