Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_2587 |
Symbol | |
ID | 3680913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | - |
Start bp | 3196314 |
End bp | 3197516 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637717934 |
Product | secretion protein HlyD |
Protein accession | YP_323097 |
Protein GI | 75908801 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR02971] ABC exporter membrane fusion protein, DevB family |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.897533 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGTAA ATAAAGAACG CCAATTATTT ATCAAACCCC AAGGTCGGTG GCGGTTGATT TTGGCAGCAT CCCTCACCTT AGCTGCTGGG CTAATATCCC TCTATAGTTT GTCCTCCAAT CGATTTTCCG CACCAGTGAA AACCCCTGTT GCCAATACTC CCAAAGCAGC ACCAGTGAGA GTTGCTGTCA CCGCTCTAGG ACGCTTGCAA CCACAAGGTC AAATCACTAC TTTATCTGCG CCTAGTTCCA CCAACGGTAT CCGTGTAGAT AGATTACTGG TGAAAGAAGG TGACGAAGTA CAAGCAGGAC AAGTATTGGC ATATCTGGAA GACTATAGCC GTGCAACCTC AGCCCTAGAA CAAGCTTTAG ATAAACTGCA AATTGCCAAA ATCAGACTTG CACAAGTAAA AGCAGGTGCT AAACCTGGAG ACATTGATGC TCAAAAAGCA ACTGTTGCTC GTTTAGAGTC GCAACTAAAA GGAGAAGTTG CTACCCAACA AGCAACAATT AATCGGATCA ACGCTGAACT CAACAACGCC CAAACCGAAA ACGATCGCTA TCAAAAATTA TTCAAAGAAG GCGCTGTTTC TGCATCTGTA TCTGACAGTA AAGCCTTACA ACTCAAAACT GTTGAACAAC AACTCACAGA AGCCAAAGCC TCTCTCAGTC GCTCTCAAAA CACCCTAGCT GACCAAATCA AAGAAGCTAA AGCTAAACTC AGCAGCGTCA AAGAAGTACG GGCTGTAGAT GTAGACTTAG CCCAGATGGA AGTGAGAAGC GCCGTAACAG CCGTCAAACA AGCCAAAGCC GACCAGGAGT TAACTTACAT AAAAGCTCCC ATCGATGGCA GAATTTTAAA AACTCATGCC AAAACAGGGG AAGTTATCCC CAGTAGTGGA TTTGCTGATA TTGGTAAGAC ATCGCAGATG TATGTAATTG CCGAAGTTTA CCAAACTGAC ATTCAAAAAG TGCGTGTAGG TCAAAAAGCA ACAATTACCA GCACAGCATT TTCTGGCAAA CTCCAAGGAA CTGTTAAGGA GATTGGTTGG CAAGTTGATA AACAAAGCAT CTTCAGCCTC AACCCCAGAT CAGATACCGA CCGGAGAATC ATTGAAGTTA AAGTCTCCAT TGACAATCCC GCAGATAGCG AAAAGGTCGC ACGTTTAACT AACCTACAAG TTGATGTATC AATTCAAATT TAA
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Protein sequence | MAVNKERQLF IKPQGRWRLI LAASLTLAAG LISLYSLSSN RFSAPVKTPV ANTPKAAPVR VAVTALGRLQ PQGQITTLSA PSSTNGIRVD RLLVKEGDEV QAGQVLAYLE DYSRATSALE QALDKLQIAK IRLAQVKAGA KPGDIDAQKA TVARLESQLK GEVATQQATI NRINAELNNA QTENDRYQKL FKEGAVSASV SDSKALQLKT VEQQLTEAKA SLSRSQNTLA DQIKEAKAKL SSVKEVRAVD VDLAQMEVRS AVTAVKQAKA DQELTYIKAP IDGRILKTHA KTGEVIPSSG FADIGKTSQM YVIAEVYQTD IQKVRVGQKA TITSTAFSGK LQGTVKEIGW QVDKQSIFSL NPRSDTDRRI IEVKVSIDNP ADSEKVARLT NLQVDVSIQI
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