Gene Ava_2410 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_2410 
Symbol 
ID3683092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp2998069 
End bp2998956 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content48% 
IMG OID637717755 
Productpeptidoglycan-binding LysM 
Protein accessionYP_322922 
Protein GI75908626 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0739] Membrane proteins related to metalloendopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.000688679 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.12748e-07 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGACTGTTT CCTACCGTCT GCTTTTACTC TGTAGTTTAG TCAGCACTAT TGGACTGACG 
ACCATACTCC CCCATGCGAG CAGGGTTAAC GCTGCTGTAG AGGGTTGCCC AATTCCCGCT
TTATCTCGCT TCAAGCGCCA TAAAGTAGTT CGTGGCGATA CGTTAGTAAC CATAGCCCAA
CGCTATAATC TCAGCCCAGA AACGCTGATT GGCATGAATC CATCTCTCCA TAATGGTTCT
TCCCCGGCTG TGGGTAGTGA ATTACAAATT CCTCCTTACA ACGGGGTGGT TGTGGAAGTG
CCTCAGGGTC AAACTTGGCG GCAGGTAGCG ACGAGATATA AAGTTCGTCC TGATACTCTA
TTTGAGATTA ATGGCTGTCA AGCAAATCCC AGAATTGTGT TTGTTCCAGG GGTAAATTGG
TCGCCTAATG GCTCTTTTAC CCAGTCTCCT AGACCTTCCA CAGCTAGAGC TTCTGCTCAG
TTAGCTGGCT ATCCTTTTCC CCAGGCTGTG GAGGTAGGCT TACCTTACGG TTGGCAGATT
AACCCTAATA CGGGTGAAGT ATTTTTCCAT AGTGGGGTGG ATTTATTGGC ATCAGTGGGG
ACTCCTGTTG AGGCGATCGC ACCAGGTACG GTAGTCTTTG CTAAGGAGCA GGGTACTTAC
GGTAATTTGG TCATCATCAA CCACAATGGC GGACTCCAAA GCCGCTACGC CCATCTTGGC
AGCATCAATG TTAAGGTTGG GCAAAAGGTT AATCAAGGCC AGTTACTCGG CACCGTCGGC
ACTACAGGAC AACCTACAGC CAAACAACCC CATCTTCATT TTGAAGTGCG TGCTAGTTCA
TCTCTAGGTT GGGTGGCAGA AAATCCTAAA GACTATTTGA AACCATAA
 
Protein sequence
MTVSYRLLLL CSLVSTIGLT TILPHASRVN AAVEGCPIPA LSRFKRHKVV RGDTLVTIAQ 
RYNLSPETLI GMNPSLHNGS SPAVGSELQI PPYNGVVVEV PQGQTWRQVA TRYKVRPDTL
FEINGCQANP RIVFVPGVNW SPNGSFTQSP RPSTARASAQ LAGYPFPQAV EVGLPYGWQI
NPNTGEVFFH SGVDLLASVG TPVEAIAPGT VVFAKEQGTY GNLVIINHNG GLQSRYAHLG
SINVKVGQKV NQGQLLGTVG TTGQPTAKQP HLHFEVRASS SLGWVAENPK DYLKP