| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_2356 |
|---|
| Symbol | |
|---|
| ID | 3683413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 2929258 |
|---|
| End bp | 2931546 |
|---|
| Gene Length | 2289 bp |
|---|
| Protein Length | 762 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637717701 |
|---|
| Product | penicillin-binding protein 1C |
|---|
| Protein accession | YP_322869 |
|---|
| Protein GI | 75908573 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
|---|
| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTCA TATCTCTATC GCTTACCAGA ATGCGGCACA GTAGTAAGGT GATCCTAGCT
GTGCTGTTAA TATGCCTATT AATCCGCTTA TCACCTTATT TTGCGCCGAT TCGTGCCGTA
GATATTGCCC AAAATCAACT AGCAATGCAA TTTAGCGATC GCAATGGGCT ACCATTAGGA
ACAATACTCA CCCGTGACCA AGAGCATACA TCAGTAGTAC CCCTAAATCA GATTTCCCCC
CAGTTTATCC AAGCAATTTT AGCCGCCGAA GATGGTAGCT TTTACCATCA TGGGGCTTTG
GATTTGCAAG CAATTGTCCG CGCCATCAAA GAAGCCATCC ACGCCAAAAA AATTGTTTCC
GGCGCTTCCA CAATTACCAT GCAGTTAGCG CGGATGTTAG AACCAGTCCC CCGCCACTTG
TCAGGGAAAA TGCAGGAAAT TTGGCTAGCG TGGCGGTTAG CAGCCGGGAT GAGTAAGGAT
GAAATCCTCT CTGCATATAT TAATCGCCTA CCAATGGGAG GGAATATATA TGGTGTAGAA
GCAGCAGCCC GCACTTATTT TTCCATACCA GCCAGTGAGT TAAATCTTGC CCAGGCTAGT
TTGTTAGCCG CCATTCCCAA TAATCCCACC TACTTTAACC CTTACGAACA TTGGGAACGT
CTGAAGCAAC GACAAAAATA CGTCCTCAAT CGGATGGTAC AGGAAGGGTA TGTGAGCAAG
GACATAGCAT ATCGCACATC CTCAGAAAAA GTTGTGTTTC AGTCCAACCA GCGAGGAATT
ATCGCCGCAC CGCATTTTTT ATTTTGGTTA GTTAATCAAA TTCCTCCCAG TCCTGCTGAC
ACAAATCAAT CAGTTATCCA CACAACTATC AATCGTCCTT TGCAGCAATT CGTCGAAGCA
CAAGTACAGC AGGTAATTTC TACTCTTTTT GCCAATAACG TTCATGACGC AGCCGCACTA
GTAATAGATA ACCACACTGG GGAAGTTTTA GCTTACGTCG GTTCACCGGA TTACTTTAAT
CAAGCCCAAC TGGGACGCAA CGACGGAGTT CAAGCCCTAC GTCAACCAGG TTCTACTCTG
AAACCCTTTG TCTATGAATT AGCCTTAGAA AAGCGGTTAA TTCGCCCAAA TACTATTTTG
GCAGATGTCC CTACCCATTA CGCCATCCCC GGCGCACAAC TCTACAGCCC AACGGATTAT
ACGGAAAACT TCCTTGGGCC AGTGCGGGTA CGCATCGCCT TAGCCAATTC CCTCAATGTA
CCAGCCGTGC GCGTCTTGGA AAAAGTGGGT GTGCCAACTT TCCTAGAACG GCTGCATCAA
CTGGGATTTG TCCACCTGAA GCAAACCCCA GAATACTATG GTTTAGGTTT AACCCTTGGT
AGTGGTGAAG TCAGCTTGTG GGAACTAGCC CAAGCCTACC TAACGATAGC AAGACAAGGA
CAACCCACCC CCTTAATCAC CACCCTTTCC CAGTCCCCAG TCCCCCATAC CCAACCCCCA
AACCCCACAA TCTGGCAATT AATCACTAAC ATCCTCAGCG ACAGCCATGC TCGTGCCACA
GCTTTCGGTG TAGATTCAGT ATTAAACTTA CCCTTCCCTG TGGCTGTGAA AACTGGTACA
TCTTCCAACT ACCGTGACAC TTGGACAGTC GGCTTTACCA CTGATTACAC CGTCGCTACC
TGGGTAGGTA ACTTTAACGG TGAACCCATG CGCCAAGTTT CCGGTGTCAC GGGTGCAGCC
CCCTTGTGGA ATCGGATTAT GTTACATCTG CACGAACATC AAGAACCAGC TAGTTTTCCC
ACCCCAACAG GTTTATTGCA ACTACCAATC TGTGCAGTTT CCGGGTTACG TCCCACACCA
GACTGTACTT CCGTAGTGCA AGAATATTTC TATCCCGAAG ATAAAATTAG CTACGAAAGG
GACACTCAGT TTACTTTACC ACCAGAATAT AACGAGTGGT TAGCCAAGCA ACAGCGATCG
CAGTTTACCA CCAGCAGCCT GAGAATTTTA TCTCCTCATG ACGGCGATTT ATTCTTACTG
TATCCAGGTG AAGAAGCACA ACAAAAATTA GAATTTAAGT TAGTAGGAAG TAAGTCTACA
CCTATAGAGT GGTGGCTCAA CGGTGAAAAG TTGAATACCC AGTCAGCTAA TTCTTTATTT
TGGTCGCTGC GTCCTGGTAA CTGGACTTTG GAGGCGAGAA GCGGTGAAAT GAGTGATAAG
GTAAAATTTC AGGTGAAATT GGCCAGTATT AAACCGACAC GTCGGGGTTT TTCAATTGGT
AATTATTAG
|
|---|
| Protein sequence | MQFISLSLTR MRHSSKVILA VLLICLLIRL SPYFAPIRAV DIAQNQLAMQ FSDRNGLPLG
TILTRDQEHT SVVPLNQISP QFIQAILAAE DGSFYHHGAL DLQAIVRAIK EAIHAKKIVS
GASTITMQLA RMLEPVPRHL SGKMQEIWLA WRLAAGMSKD EILSAYINRL PMGGNIYGVE
AAARTYFSIP ASELNLAQAS LLAAIPNNPT YFNPYEHWER LKQRQKYVLN RMVQEGYVSK
DIAYRTSSEK VVFQSNQRGI IAAPHFLFWL VNQIPPSPAD TNQSVIHTTI NRPLQQFVEA
QVQQVISTLF ANNVHDAAAL VIDNHTGEVL AYVGSPDYFN QAQLGRNDGV QALRQPGSTL
KPFVYELALE KRLIRPNTIL ADVPTHYAIP GAQLYSPTDY TENFLGPVRV RIALANSLNV
PAVRVLEKVG VPTFLERLHQ LGFVHLKQTP EYYGLGLTLG SGEVSLWELA QAYLTIARQG
QPTPLITTLS QSPVPHTQPP NPTIWQLITN ILSDSHARAT AFGVDSVLNL PFPVAVKTGT
SSNYRDTWTV GFTTDYTVAT WVGNFNGEPM RQVSGVTGAA PLWNRIMLHL HEHQEPASFP
TPTGLLQLPI CAVSGLRPTP DCTSVVQEYF YPEDKISYER DTQFTLPPEY NEWLAKQQRS
QFTTSSLRIL SPHDGDLFLL YPGEEAQQKL EFKLVGSKST PIEWWLNGEK LNTQSANSLF
WSLRPGNWTL EARSGEMSDK VKFQVKLASI KPTRRGFSIG NY
|
|---|
| |