Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_2004 |
Symbol | |
ID | 3681431 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 2486012 |
End bp | 2486722 |
Gene Length | 711 bp |
Protein Length | 236 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637717346 |
Product | TPR repeat-containing protein |
Protein accession | YP_322521 |
Protein GI | 75908225 |
COG category | [R] General function prediction only |
COG ID | [COG0457] FOG: TPR repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.149426 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAGTC ACTCATTTTT AGCCTCTGGT GATCAGCAGA ATAACTGTTA CCAATTTATT GCTAAGACTA AACTGGACCC TCAAGAAAAT GGGGCTAGGG GTGATGAGTC GGGGTTCGGT GATGGCTACT TACGCTCTTG TGCTTTGAGA TCAGCGCAAC AGGGAAATTA TAGCGAAGCG ATCGCTCTCC TGAACCAATT GATTAACCGC CATCCTGACA ACGCGGTTGA CTACAACAAC CGGGGGTTAA TCTATTTTCA ATGTGGACAT ACTCAAAAGG CAATACAAGA TTACAACACC GCATTACATT TGAATCCTGA TTTAGCCAGC GCTTACAACA ATCGCGCCAA TTATTACGCA GCTTGTGGAC AACTAGCAGC CGCTCTGGCT GATTACGATC GCGCTATTGA TTTAAATCCT CGTCATGTGC GAGCCTGGAT TAATCGTGGC ATTACTCTAC GCGATTTGGG CGAATATGAC CAAGCAATTG AGAATTTTGA TATTGCCCTG GTTTTTGGTC AGCTAGAGGG GCATATCTGG GCTGAACGTG GTAGAACTTA CCATCTTTGG GGTGATTGGA ATTGTGCGAT CGCCGACTAT CGTCGTGCCG AAACTCAATT ACCTTCGTTA CATGGTCGCA GAGATGTTCC TGGCTACCGT TTGCGGCTAC AAATGGAAAA TTGGTTAAAT GAATTGCTGC CTTCGGCGTA A
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Protein sequence | MNSHSFLASG DQQNNCYQFI AKTKLDPQEN GARGDESGFG DGYLRSCALR SAQQGNYSEA IALLNQLINR HPDNAVDYNN RGLIYFQCGH TQKAIQDYNT ALHLNPDLAS AYNNRANYYA ACGQLAAALA DYDRAIDLNP RHVRAWINRG ITLRDLGEYD QAIENFDIAL VFGQLEGHIW AERGRTYHLW GDWNCAIADY RRAETQLPSL HGRRDVPGYR LRLQMENWLN ELLPSA
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