Gene Ava_2004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_2004 
Symbol 
ID3681431 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp2486012 
End bp2486722 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content46% 
IMG OID637717346 
ProductTPR repeat-containing protein 
Protein accessionYP_322521 
Protein GI75908225 
COG category[R] General function prediction only 
COG ID[COG0457] FOG: TPR repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.149426 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAGTC ACTCATTTTT AGCCTCTGGT GATCAGCAGA ATAACTGTTA CCAATTTATT 
GCTAAGACTA AACTGGACCC TCAAGAAAAT GGGGCTAGGG GTGATGAGTC GGGGTTCGGT
GATGGCTACT TACGCTCTTG TGCTTTGAGA TCAGCGCAAC AGGGAAATTA TAGCGAAGCG
ATCGCTCTCC TGAACCAATT GATTAACCGC CATCCTGACA ACGCGGTTGA CTACAACAAC
CGGGGGTTAA TCTATTTTCA ATGTGGACAT ACTCAAAAGG CAATACAAGA TTACAACACC
GCATTACATT TGAATCCTGA TTTAGCCAGC GCTTACAACA ATCGCGCCAA TTATTACGCA
GCTTGTGGAC AACTAGCAGC CGCTCTGGCT GATTACGATC GCGCTATTGA TTTAAATCCT
CGTCATGTGC GAGCCTGGAT TAATCGTGGC ATTACTCTAC GCGATTTGGG CGAATATGAC
CAAGCAATTG AGAATTTTGA TATTGCCCTG GTTTTTGGTC AGCTAGAGGG GCATATCTGG
GCTGAACGTG GTAGAACTTA CCATCTTTGG GGTGATTGGA ATTGTGCGAT CGCCGACTAT
CGTCGTGCCG AAACTCAATT ACCTTCGTTA CATGGTCGCA GAGATGTTCC TGGCTACCGT
TTGCGGCTAC AAATGGAAAA TTGGTTAAAT GAATTGCTGC CTTCGGCGTA A
 
Protein sequence
MNSHSFLASG DQQNNCYQFI AKTKLDPQEN GARGDESGFG DGYLRSCALR SAQQGNYSEA 
IALLNQLINR HPDNAVDYNN RGLIYFQCGH TQKAIQDYNT ALHLNPDLAS AYNNRANYYA
ACGQLAAALA DYDRAIDLNP RHVRAWINRG ITLRDLGEYD QAIENFDIAL VFGQLEGHIW
AERGRTYHLW GDWNCAIADY RRAETQLPSL HGRRDVPGYR LRLQMENWLN ELLPSA