| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1974 |
|---|
| Symbol | |
|---|
| ID | 3681537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 2448511 |
|---|
| End bp | 2449785 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637717315 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_322491 |
|---|
| Protein GI | 75908195 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00936884 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.989231 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAA AAACGTGGCT GCAAATACCT GCTTTTAGGT CAAGAAATTA TCGCTTGTTT
TTTGCAGGAC AAGGAATTTC TCTAATTGGC ACTTGGATGA CACAACTAGC CACTGTTTGG
CTAGTTTATA GCTTAACTAA TTCCCCTTTA ATGTTGGGAG TTGTGGGATT TACTAGTCAG
ATTCCTAGTT TCTTTCTTGC ACCTTTTGGA GGCGTATTTG TAGACAGATT TTCCCGTTAT
CGAACCTTGA TTGGTACACA AGTACTAGCA ATGTTTCAGT CGTTAACCTT AGCAGCGTTA
ATGTTCACAG GTGTCATTCA AATTTGGCAT ATTATCGCCT TAAGCTTACT CCAAGGAATG
ATTAACGCCT TAGACGCACC TGCTAGACAA GCCTTTGTCC CAGAACTCGT GCAACGCAGA
GAAGATATAG CTAATGCGAT CGCCATCAAC TCGACTATGA TTAATGGGGC GCGATTAATT
GGCCCAGCCA TTGGGGGCTT ATTAATATCC TGGGTGGGTG TAAAGTATTG TTTTCTAATA
GATGGCTTGA GTTATATTGC CGTCATTGCT AGTTTATTGG CGATGAAAGT TAAACCTTGG
ACAGTGACTA GAATTGATGG TAATCCCTTA CAGCAAGTCA AAGAAGGATT TATTTACGCC
TTTAGCTTTC CACCAATTAG AGCGATTTTA TTACTATCAA CTTTAGTGAG TTTGATGGGA
TTACAAAATA CTATCCTTGT GCCAATTTTT GCTGAAACTA TTCTCAAAGG TGGTGCGGAA
AGCTTAGGAT TTATCATGGC AGCTTCAGGA CTGGGAGCCT TATCTGGTGG TATTTATTTA
GCCAGTAAAA AAACAATTCT AGGCATTGGT AAACTCATTG CTATAGCTCC AGCAATTTTA
GGATTTGGAC TAATTGCTTT TGCCATTTCT CGATATTTAC CTCTTTCTCT ATTCACCATG
TTGTTTGTTG GCTTAGGAAC AATTTTACAA ATAGCTGCTA GCAATACATT TCTGCAAACA
ATTGTCGAAG AAGATAAGCG TGGTAGATTG ATGAGCTTAT ATACCATGTC ATTTTTAGGG
ATGATACCTG TGGGTAATTT ATTGGGTGGT GCATTAGCCA ATAGAATCGG CGCACCTAAT
ACATTAATTA TTGATGGTAT AGCTTGTATT ATCGGTTCAA TATTATTTCA AAGAGAATTA
CCAAAGCTGA GAAAATTAAT CATGCCAATT TATGAGCAAA AAGGTATTGT AACAGTTGAG
AATAAAAGTG CTTAA
|
|---|
| Protein sequence | MNKKTWLQIP AFRSRNYRLF FAGQGISLIG TWMTQLATVW LVYSLTNSPL MLGVVGFTSQ
IPSFFLAPFG GVFVDRFSRY RTLIGTQVLA MFQSLTLAAL MFTGVIQIWH IIALSLLQGM
INALDAPARQ AFVPELVQRR EDIANAIAIN STMINGARLI GPAIGGLLIS WVGVKYCFLI
DGLSYIAVIA SLLAMKVKPW TVTRIDGNPL QQVKEGFIYA FSFPPIRAIL LLSTLVSLMG
LQNTILVPIF AETILKGGAE SLGFIMAASG LGALSGGIYL ASKKTILGIG KLIAIAPAIL
GFGLIAFAIS RYLPLSLFTM LFVGLGTILQ IAASNTFLQT IVEEDKRGRL MSLYTMSFLG
MIPVGNLLGG ALANRIGAPN TLIIDGIACI IGSILFQREL PKLRKLIMPI YEQKGIVTVE
NKSA
|
|---|
| |