Gene Ava_1905 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1905 
Symbol 
ID3681779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp2366836 
End bp2367819 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content47% 
IMG OID637717246 
ProductRNA polymerase sigma factor 
Protein accessionYP_322422 
Protein GI75908126 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.25231e-11 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0162266 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTACTG TTAACACCCA CACAGAAGAC ACAAATACCA AATTCACGGC TGATATGGTG 
CGAACCTATC TGCGCGAAAT TGGTCGTGTA CCCCTGCTCA CCCGTGAGCA AGAGATTGTT
TACGGGAAGC AGGTGCAGCA AATGATGTCG CTGATTGACG CTAAAGAGGC TTTAGCGAAA
AAATTGGATC GAGAACCGAG TTTACCAGAG TGGGCTGACC ACGTTCAAAA GTCTGAAACA
GAGGTGAAAC AGACTGTAAC TCAGGGTAAG CGAGCCAAGC AAAAAATGAT TGAAGCGAAC
CTGCGTTTGG TAGTGGCGAT TGCCAAGAAA TACCAAAAGC GGAACATGGA GTTCCTAGAT
TTAATCCAAG AAGGAACTCT AGGACTAGAA AGAGGCGTAG AGAAGTTTGA CCCGATGAGG
GGTTACAAAT TCTCAACCTA CGCTTACTGG TGGATTCGCC AAGCGATTAC CCGTGCGATC
GCTCAACAAG GTCGTACCAT CAGGTTACCT ATCCATATTA CCGAGAAACT AAACAAAATC
AAAAAAGTTC AACGCGAACT AGCTCAAACC TTGGGGCGTT CTCCTTCACC GGCAGAAATC
GCCAAAGAAC TAGAACTAGA ACCTGCTCAG ATTCGTGAGT ATCTGAACAT GGCGCGTCAA
CCAGTTTCTC TCGATGTGAA AGTTGGTGAC AACCAGGATA CAGAACTGCA AGAAATGCTC
GAAGATGAAG GCCCATCACC AGAGTATTAC ACCACTCAAG AATTCTTGCG CCAAGACTTG
AATACTCTCT TGGCAGAACT CACACCCCAA CAGCGAGAAG TCGTAGCCTT GCGCTTTGGC
TTACTAGACG GTAACGAATT GTCCTTGGCG AAAGTCGGTG AACGATTGAA CCTCAGTCGT
GAACGCGTCC GCCAATTAGA ACATCAAGCA CTAGCTCATC TGCGTCGCCG TCGAGCCAAT
GTCAAAGAAT ACGTCGCCAG CTAA
 
Protein sequence
MPTVNTHTED TNTKFTADMV RTYLREIGRV PLLTREQEIV YGKQVQQMMS LIDAKEALAK 
KLDREPSLPE WADHVQKSET EVKQTVTQGK RAKQKMIEAN LRLVVAIAKK YQKRNMEFLD
LIQEGTLGLE RGVEKFDPMR GYKFSTYAYW WIRQAITRAI AQQGRTIRLP IHITEKLNKI
KKVQRELAQT LGRSPSPAEI AKELELEPAQ IREYLNMARQ PVSLDVKVGD NQDTELQEML
EDEGPSPEYY TTQEFLRQDL NTLLAELTPQ QREVVALRFG LLDGNELSLA KVGERLNLSR
ERVRQLEHQA LAHLRRRRAN VKEYVAS