| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1820 |
|---|
| Symbol | |
|---|
| ID | 3681928 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 2266035 |
|---|
| End bp | 2266901 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637717160 |
|---|
| Product | ribosomal large subunit pseudouridine synthase B |
|---|
| Protein accession | YP_322337 |
|---|
| Protein GI | 75908041 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTTG CCCAAACTCT AGCTGTTTTG AATTTTGTAG CGCTTGTGTT TCCTGTAGGG
TATTTTGAAT TGTCAAATAT GGAGGCTAGG TTACAAAAAG TTCTTGCTCA ATGGGGTATC
GCCTCTCGTC GGGAGGCAGA AGAAATGATA CGGCGATCGC GTGTGCAGAT AAATGGCACA
TTGGCTGAAT TAGGTCAAAA AGTTAACCCA GAAAGGGATA TAATTACAGT TGATGGCAAG
TCAGTATCAG CTCAAAGGCA TCACCGTCTA ACGTACTTAT TATTAAACAA ACCCACCGGA
GTAGTTTCTA CTTGCTACGA TCCACAGGGT AGAAAAACTG TGTTAGATTT ATTGCCAGAA
GAATTACGTA AGGGTTCGGG TCTTCACCCA GTTGGTCGCC TAGACGCATA TTCTACAGGA
GCATTAATAC TGACCAATGA TGGAGATTTG ACATTTAAGC TGACTCATCC CAGTCATAAT
ATTCCCAAGA CTTATCAAAT TTTAGTGAAA GGTCATCCCC CAGAAGCAGT GCTAAAAATG
TGGCGGGAGG GTGTGCTGTT AGATGGGAGA AAAACCCGCA AAGCCAAGGT AAGCTTGCTA
GAAAGTCTGG CAGAAAAAAG TCGTTTAGAA ATCGTTTTGC AGGAGGGACG CAATCGCCAA
ATTCGCCGTG TAGCAGAACA ATTAGGGTAT CCAGTAATTA AATTACATCG TACGGCGATC
GGTTCAATTC AATTACAAAC ATCAAAACAA CCATTATTGC GTGCTGGGAA TTACCGCATT
CTTCGAGATG ACGAGATTCG TAGTTTACAG GAACAGTTAA AACATATTCC TACGCAACGA
ATCAAAGTTC AAAACCCCCA ACCGTAA
|
|---|
| Protein sequence | MTVAQTLAVL NFVALVFPVG YFELSNMEAR LQKVLAQWGI ASRREAEEMI RRSRVQINGT
LAELGQKVNP ERDIITVDGK SVSAQRHHRL TYLLLNKPTG VVSTCYDPQG RKTVLDLLPE
ELRKGSGLHP VGRLDAYSTG ALILTNDGDL TFKLTHPSHN IPKTYQILVK GHPPEAVLKM
WREGVLLDGR KTRKAKVSLL ESLAEKSRLE IVLQEGRNRQ IRRVAEQLGY PVIKLHRTAI
GSIQLQTSKQ PLLRAGNYRI LRDDEIRSLQ EQLKHIPTQR IKVQNPQP
|
|---|
| |