Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_1617 |
Symbol | |
ID | 3679174 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 2023613 |
End bp | 2025622 |
Gene Length | 2010 bp |
Protein Length | 669 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 637716957 |
Product | ABC transporter-like |
Protein accession | YP_322135 |
Protein GI | 75907839 |
COG category | [R] General function prediction only |
COG ID | [COG4178] ABC-type uncharacterized transport system, permease and ATPase components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.477524 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0228271 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCTACCC AAGTTGTTCA AGCTAAACCA GCAACAAATG CTTTTTTAGA TTTTATCCAA TTCTGGAAAG ATGTCAGGGC GATCGCCGGC CCTTACTGGT ATCCTACCAA GCCAGGAGAA AGAGCATTTT CAGACGTTAT TCGTGCCTGG GGAATGCTGA TTCTCCTCAT ATTATCAATA TTAGCTCTCG TAGGTGTCAC CACTTTTAAC ACTTTTATTC ATCGCTATTT AATTGATGTC ATTATTCAAG AAAGAAATTA TCCTAAATTT GTTGACACCA TATTAATTTA TGGTGTGGGA CTTGTCTTCA TAACACTGTT GGTAGGATTT ACTAAGTTTA TTAGAAAACA AATTTCTCTT GACTGGTATC AATGGCTGAA TAATCATATA CTGAATAAAT ATCTGCACAA TCGTGCTTAC TATAAAATTA ACTTTGTACC TGAAATTGAT AATCCAGATC AACGGTTATC TCAAGAAATT GAACCAATTA CTAGTAGTGC GCTCAGCTTT TCAGCTACTT TCCTAGAGAA AATTCTGGAA ATGATCACTT TTTTACTAGT TGTGTGGTCA ATTTCTCAAC AGATAGCTAT TGCTTTGTTA ATTTACACTT TTATAGGTAA CTTTATCGCT GTTTACTTAA ATCAAGAATT AATTAAGATT AATCAGGCAG AACTCGAATC TAAAGCCGAT TATAGCTACT CTCTCACTCA TGTCCGCAAT CACGCTGAGT CAGTAGCTTT TTTTCAAGGA GAAGACCAAG AACAAAATAT AATTCAACGC CGATTTACTA CTCTCATCAA TGATATGAAA CACAAAATCA ATTGGGAGAG AAATCAGGCA ATTTTCAACA GAGGATATCG ATCTGCTATT GAACTCCTCA CCCTTTTAGT ACTCTCACCT TTATATATCA GAGGTGACAT TGATTTTGGA CAAGTTGGAC AAGCGACTAC GGCTTGCTAT TTCTTTGCTG GTGCTTTGGA AGAATTAATC GCTGAATTTG GTATTTCTGG ACGATTTTCT AGTTATGTCC AGCGTTTATC CGAGTTTTCA GATGCTTTAC AAGCGGTAGC CAAACCACCA GAGAACGTCG GTACGATTAA AACAATCGAA GAAAATCATT TTGCTTTTGA GAATGTTACC TTACAAACAC CAAATTATGA GCAGGTAATA GTCGAAAACT TGTCATTAAA CGTCCAGCCT GGAGAGGGTT TATTAATTGT CGGGCCGAGT GGTCGGGGTA AAAGTTCTCT ATTGAGGGCG ATCGCTGGTT TGTGGAATGC GGGAACAGGT CGTTTGATGC GACCCCCCCT AAACGAAGTT CTATTTTTAC CCCAACGTCC TTATATAATT TTAGGAACTT TGCGTGAACA ATTACTCTAT CCTAAAACTC ATCGTCAAAT GAGTGATGCA GAACTCAAAG AAGTTTTACA ACAAGTTAAT CTGCAAAACT TGTTAAGTCG AGTTGACAGC TTTGATACTG AAGTTCCTTG GGAAAATATA CTATCCCTGG GAGAACAACA ACGCCTCGCT TTCGCACGCC TATTAGTGAC TCATCCCAGA TTCACCATAT TAGATGAAGC AACTAGTGCT TTAGATTTGA AAAACGAAGG ACGTTTATAT CAACAGCTAC AAGAAACGAA AACAACCTTT ATTAGTGTTG GACATCGAGA AAGTCTATTT GATTATCATC AATGGGTTCT CGAACTTGTA CAAGATTCTA GTTGGCAACT TATGAGAGTT GAAGACTATC GCAATCAAAA ACAAGGCATC ACTAAACCAA TAGTAAATAC TCAAGTTACA ATTGATATTT CATCTGAAGA TGAATCTCCC AATGAGCCAG CAATTAATAC AGATGAAAGG CTTAGTCATA AAGAAATGAA CTCCTTAACC TACTATTCTG TTTCTACTAT TAGAAGTAAG GCAAGTAAAG GAGATACTAT CACTACCAGG GACGGTATTA CCTATCGCTA TGATAAAGAT CCTCAGGTGT TGAAATGGGT GAGAGTTTAG
|
Protein sequence | MPTQVVQAKP ATNAFLDFIQ FWKDVRAIAG PYWYPTKPGE RAFSDVIRAW GMLILLILSI LALVGVTTFN TFIHRYLIDV IIQERNYPKF VDTILIYGVG LVFITLLVGF TKFIRKQISL DWYQWLNNHI LNKYLHNRAY YKINFVPEID NPDQRLSQEI EPITSSALSF SATFLEKILE MITFLLVVWS ISQQIAIALL IYTFIGNFIA VYLNQELIKI NQAELESKAD YSYSLTHVRN HAESVAFFQG EDQEQNIIQR RFTTLINDMK HKINWERNQA IFNRGYRSAI ELLTLLVLSP LYIRGDIDFG QVGQATTACY FFAGALEELI AEFGISGRFS SYVQRLSEFS DALQAVAKPP ENVGTIKTIE ENHFAFENVT LQTPNYEQVI VENLSLNVQP GEGLLIVGPS GRGKSSLLRA IAGLWNAGTG RLMRPPLNEV LFLPQRPYII LGTLREQLLY PKTHRQMSDA ELKEVLQQVN LQNLLSRVDS FDTEVPWENI LSLGEQQRLA FARLLVTHPR FTILDEATSA LDLKNEGRLY QQLQETKTTF ISVGHRESLF DYHQWVLELV QDSSWQLMRV EDYRNQKQGI TKPIVNTQVT IDISSEDESP NEPAINTDER LSHKEMNSLT YYSVSTIRSK ASKGDTITTR DGITYRYDKD PQVLKWVRV
|
| |