Gene Ava_1583 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1583 
Symbol 
ID3678709 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1954349 
End bp1955431 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content46% 
IMG OID637716923 
Productphotosystem II reaction centre protein PsbA/D1 
Protein accessionYP_322101 
Protein GI75907805 
COG category 
COG ID 
TIGRFAM ID[TIGR01151] photosystem II, DI subunit (also called Q(B)) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.69219e-12 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAACAC TTTTAGAACA GCGTAGTAGC GCTAATTTAT GGCATAGATT CGGTAACTGG 
ATTACCAGTA CGGAAAATCG AATGTATGTT GGTTGGTTTG GAGTACTGTT AATTCCCACA
GCCTTAACTG CGGCGATTGT CTTTATCCTT GCGTTTATTG CCGCGCCACC AGTTGACGTG
GATGGCATTC GTGAACCAGT ATCAGGTTCT CTGCTCTACG GTAATAACAT TATTACTGCT
ACTGTAGTAC CAACTTCAGC CGCTATTGGC CTGCACTTAT ACCCTATATG GGAAGCGGCT
TCTTTAGACG AATGGCTGTA CAATGGCGGC CCTTACCAAA TGATTGTCCT GCATTTCCTG
ATTGCCATCT ATGCTTATAT GGGTCGGCAA TGGGAACTGA GTTATCGCTT AGGGATGCGT
CCGTGGATTC CTGTAGCTTT TTCTGCTCCC GTTGCGGCCG CAACAGCCGT GCTGTTGATT
TATCCCATTG GGCAAGGCAG TTTTTCCGAT GGGATGATGC TGGGTATTTC TGGCACATTC
AACTTTATGA TTGTGTTTTC ACCGGAACAT AATATTCTCA TGCACCCATT TCACATGATT
GGTGTAGCTG GAGTCTTTGG TGGGGCATTA TTCTCGGCAA TGCACGGTTC CTTGGTGACA
TCTACACTAG TGCGGGAAAC CTCAGAAGTA GAATCAGCCA ATACTGGCTA TAAGTTTGGT
CAAGAAGAGG AAACCTACAA TATCGTAGCT GCACATGGTT ACTTTGGGCG GTTAATCTTC
CAATATGCCA GCTTTAACAA CTCCCGTTCT TTGCATTTCT TCCTAGCAGC TTGGCCGGTA
ATTGGTATCT GGTTTGCGGC TTTGGGTATC AGCACCATGT CCTTTAACTT GAATGGGTTT
AACTTCAATA ACTCAATTTT GGATCACCAA GGACGGACAA TTGACACTTG GGCAGACCTG
CTTAACAGAG CCAACTTAGG GATTGAAGTG ATGCACGAGC GAAATGCTCA CAACTTCCCG
CTAGATTTAG CGTCTGGTGA AGTTCAACCA ATTGCTTTGG CTGCTCCAGC GATCGCTAGT
TAG
 
Protein sequence
MTTLLEQRSS ANLWHRFGNW ITSTENRMYV GWFGVLLIPT ALTAAIVFIL AFIAAPPVDV 
DGIREPVSGS LLYGNNIITA TVVPTSAAIG LHLYPIWEAA SLDEWLYNGG PYQMIVLHFL
IAIYAYMGRQ WELSYRLGMR PWIPVAFSAP VAAATAVLLI YPIGQGSFSD GMMLGISGTF
NFMIVFSPEH NILMHPFHMI GVAGVFGGAL FSAMHGSLVT STLVRETSEV ESANTGYKFG
QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV IGIWFAALGI STMSFNLNGF
NFNNSILDHQ GRTIDTWADL LNRANLGIEV MHERNAHNFP LDLASGEVQP IALAAPAIAS