| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1490 |
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| Symbol | secD |
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| ID | 3682495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | - |
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| Start bp | 1834325 |
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| End bp | 1835749 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637716830 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_322008 |
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| Protein GI | 75907712 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAGAC AGCGATCGCT ATTAGCGTTG ATTGTAGTTT TATTAATCGC CGCCATTGCG
GTGATCTTCA CAATTCCCAT ACCCTTGGGA CTAGATTTGC GGGGAGGCTC ACAGATCACA
ATTCTGGTGA AACCAACAGC CGAAATTAAG CAAATCACCG AACGTGAACT GAATGGGGTC
AAAAGTGTCG TTGAAGGCCG AATTAATGGT CTTGGTGTTT CTGAACCCGT AATTCAAACT
GTAGGGGCAG ATAAGATCCT TGTACAGTTA CCAGGGGTAA ACGACCCAGA ACAAGCGGAA
CGGGTGCTGG GAGGTACAGC ACAACTAGAA TTCCGTAAAC AAAAACCAGG GACTGAAACC
CAACTACTAG CATTTCAAGC ATCAAGATTA GAACTGCAAG CAAAACAAGC AGAATTAAAA
AAAAGTAACG ATAAAGCCGC AGTTAATAAA AATTTAGAAG ATTTACAAAA AAATAATCAA
GCGATCGCTG AGTTATTTGA AAGCACCAAT CCACCCCTTG ATGGTAAACA CTTGCAAGAT
GCCTATGGTG AACCAACTCA AGGTAGTAGC AATTGGAATG TGGCTATTCG TTTTGACCAA
AAAGGCGGCG AACTATTTGC CGAACTGACG AAAAATCTTG CCGGGACTGG ACGTAGCATT
GGGATCTTTT TAGATAACGA ACTGATAAGC GCTCCCAATG TAGGTATAGA GTTTGCTTCT
ACCGGGATTA CTGGTGGTTC GGCTGTGATT ACGGGTAGAT TTACAGCACA ACAAGCCAAT
GATTTAGGTG TGCAGTTACG TGGTGGTGCT TTGCCTGTAC CAGTAGAAAT TGCCGAAATT
CGCACAGTTG GCGCAACCTT AGGTCAAGAC AGCATCAAAA GCAGTATCTA TGCTGGACTT
GGTGGTTTGG CTTTAGTACT CATATTTATG GTTGTGTACT ACAGGCTGCC AGGATTAATT
GCCGATATCG CCTTAGTTAT CTACGCTATC TTAACCTGGG CTAGTTTCGC GCTGTTAGGT
ATAACCTTGA CCTTACCAGG CATCGCAGGT TTCATTCTCA GTATCGGCAT GGCAGTAGAT
GCCAACGTGC TAATTTTTGA GCGCACACGG GAAGAACTAC AGGCTGGTAA ATCCTTGTAT
CGTTCTGTAG AATCCGGCTT TTACCGCGCT TTCTCCAGCA TCTTAGATGG TAACCTGACA
ACAGTCATTG CTTGTGCTGC CTTATTCTGG TTGGGGGCTG GTCTAGTCAA AGGTTTTGCT
TTAACCTTGG CATTGGGTGT CGCCGTGAGT ATGTTTAGCG CCATTACCTG TAGTCGCACC
TTCATGTTTT TGGCAATCAG TATTCCTAGT TTGCGTAAAC CAGAACTCTT CTGTCCCAAC
CTACCAGGAA CAAGTGCATC GAATAAGACT GAGGTGGCTA AATGA
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| Protein sequence | MQRQRSLLAL IVVLLIAAIA VIFTIPIPLG LDLRGGSQIT ILVKPTAEIK QITERELNGV
KSVVEGRING LGVSEPVIQT VGADKILVQL PGVNDPEQAE RVLGGTAQLE FRKQKPGTET
QLLAFQASRL ELQAKQAELK KSNDKAAVNK NLEDLQKNNQ AIAELFESTN PPLDGKHLQD
AYGEPTQGSS NWNVAIRFDQ KGGELFAELT KNLAGTGRSI GIFLDNELIS APNVGIEFAS
TGITGGSAVI TGRFTAQQAN DLGVQLRGGA LPVPVEIAEI RTVGATLGQD SIKSSIYAGL
GGLALVLIFM VVYYRLPGLI ADIALVIYAI LTWASFALLG ITLTLPGIAG FILSIGMAVD
ANVLIFERTR EELQAGKSLY RSVESGFYRA FSSILDGNLT TVIACAALFW LGAGLVKGFA
LTLALGVAVS MFSAITCSRT FMFLAISIPS LRKPELFCPN LPGTSASNKT EVAK
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