Gene Ava_1466 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1466 
Symbol 
ID3682509 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1809178 
End bp1811061 
Gene Length1884 bp 
Protein Length627 aa 
Translation table11 
GC content45% 
IMG OID637716805 
Productcell wall hydrolase/autolysin 
Protein accessionYP_321984 
Protein GI75907688 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.00817e-10 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.166489 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAATTAC ATTGGTTACT ATCCGGTACG GTTGGAACCA TCTTCTTACT ATCGTCACCA 
GCTTTAGCAG CAAGGCTAGA CTCCTGGCGA TTTGACCCTA GACAAAATCG TTTAGAGATT
AATACTAACG GCGCTGTACA ACCCAAGGCG CAACTGATTT TCAATCCGAC ACGTTTAGTT
ATTGATTTAC CCGAAACTAC ATTTGGTCAG CCCCCATCAA CACAGCCAAT AGGTGGTGCA
GTTCGGGCTA TACGTGTAGG ACAATTTGAT CCACAAACCA CGCGTATCGT CGTAGAACTC
AATCCTGGTT ACACACTCGA CCCCCAACAA GTCAAATTTG TCGGTATCAG CCCTAGTCGC
TGGACTGTGC AGTTACCTAC CCCAACAGTT GAAAGAGTCG CATCGCCAAG AGAAACTGCA
CAGCAGCCAG TACCGACCAT TCCCTCGGAA ACCGTCGTTG AGACACCCTC GGTTTTATCA
CCCAGAAATG TTTACTCTGT CACCCCAAAT ACTAGAGAAG CTCAAGTTAC TAATATTGCA
TCTGTAACTC AAATTGATAA CTTACGAGTT ACAGGCGATG GATTTTTTAT CCGTACCCGT
GGTGCTACTC CCCAAATTCA AGTTAATCGT ACAGATGATA ATCGGGTAAT TAATATCAAC
GTTGCTGGCG CATCTTTATC ACCAAACATC GAGAGAGATT TATCAATTAA TCGTTATGGT
GTTAACAACA TCCAATTGAC TCAACTGTCA ACGCAAACTG TACGTATCTC CATGCAGGTG
GATAGAAACA GTCCTGACTG GCGAGTGAGT ACTAGCAGCG TGGGTGGATT TGTGCTTCTC
CCTAGTAAAG GCATTGCCAA CTTACCCCAA AATAATACTC CCAACACCAT TTCAGCAAAT
ACCAACTCAC CAGCTACTAT TCAAGCTGTA GAACTAGGTG ATAATGGCAC ACAACTTTTA
ATTCGCTCTG ACCAAGCAGT CACAGCTAAA GGCGGCTGGG ACAGAACCTC TGGACTTTAC
CGCATCATTA TCAATAACGC TAAGTTATCT CCTAGAGTTA CAGGCCCAGC TTTTAATGCT
AACAGTCCTA TCCTCCGTGT CCGTCTGCAA CCCCAAGCAG CCGATACGGT AGTTGTTTTG
GTACAACCAG CAGCCGGAGT GCAAATAGGA GAACTTAATC AAGTAAGTAA CCAAATTTTA
GCTCTAGAAT TACAATCTTC TCGGCAATTG ATACCACCAG TAGGTTTACC ACCCCTACCA
TCAACAAATC GTAGTCAATT GCCAAATCCA AATATCGATA ATCCCATAAA TGTTCCACAA
CCAATACCCA GGTCAGTTCC CAGGGGAAGA CTTCTAGTCG TCATTGACCC TGGACATGGT
GGTAAAGATT CTGGCGCTCC TGGTTTAGGT GGATTACTAG AAAAAGATGT AGTCCTGCCC
ATTGGTTTAA GAGTAGCCGC TATTTTAGAA CAGAATGGTG TCCAAGCAGT CTTGACGAGA
AATTCTGACT TTTTCGTGGA GTTACAGGGA CGGGTAGATA TTGCCGAACG AGCCAACGCG
ACTTTGTTTG TGAGTATTCA CGCCAACTCT GTAGATGGTC GCCCTGATGT TAATGGCTTG
GAAGTATATT ACTACGATAG TGGTTATGCT TTAGCCGAAA CAGTCCGCAA GACTATTCTC
CAGAGTATTG GCACACTCAA AGACCGAGGC ACACGCAAAG CTCGGTTCTA CGTCCTGAGG
AAGAGTTCTA TGCCATCGAT TCTAGTAGAA ACAGGTTATA TGAGTGGTAG GGAAGATAAT
CCCAGACTAG GCTCACCAGA ATACCAAAAT CGTATGGCAG ATGCGATCGC TCGTGGTATC
CTGCAATATT TAAAGAGACA GTAA
 
Protein sequence
MKLHWLLSGT VGTIFLLSSP ALAARLDSWR FDPRQNRLEI NTNGAVQPKA QLIFNPTRLV 
IDLPETTFGQ PPSTQPIGGA VRAIRVGQFD PQTTRIVVEL NPGYTLDPQQ VKFVGISPSR
WTVQLPTPTV ERVASPRETA QQPVPTIPSE TVVETPSVLS PRNVYSVTPN TREAQVTNIA
SVTQIDNLRV TGDGFFIRTR GATPQIQVNR TDDNRVININ VAGASLSPNI ERDLSINRYG
VNNIQLTQLS TQTVRISMQV DRNSPDWRVS TSSVGGFVLL PSKGIANLPQ NNTPNTISAN
TNSPATIQAV ELGDNGTQLL IRSDQAVTAK GGWDRTSGLY RIIINNAKLS PRVTGPAFNA
NSPILRVRLQ PQAADTVVVL VQPAAGVQIG ELNQVSNQIL ALELQSSRQL IPPVGLPPLP
STNRSQLPNP NIDNPINVPQ PIPRSVPRGR LLVVIDPGHG GKDSGAPGLG GLLEKDVVLP
IGLRVAAILE QNGVQAVLTR NSDFFVELQG RVDIAERANA TLFVSIHANS VDGRPDVNGL
EVYYYDSGYA LAETVRKTIL QSIGTLKDRG TRKARFYVLR KSSMPSILVE TGYMSGREDN
PRLGSPEYQN RMADAIARGI LQYLKRQ