| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1410 |
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| Symbol | |
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| ID | 3682646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | + |
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| Start bp | 1741364 |
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| End bp | 1742536 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637716747 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_321928 |
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| Protein GI | 75907632 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.414735 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAGG CTAACAACGT ACTCGATAGC ATTTATCAGC CTGACCTAGA AATAATGAAT
CAGCCTGAAA TCGAGTTAGA TGACCTCCTC ATTGAAGAAG ATGAGGATTT GTTGCTCGCT
GATGATGGCG ACATTGATGA GTTTTTAGAG CCTCAGACTG ATGAGGACGA CGCAAAGTCT
GGAAAAGCCG CTAAGTCGCG TCGTCGGACA CAAAGCAAGA AAAAGCACTA CACAGAAGAT
TCAATTCGTC TGTATTTGCA AGAAATTGGT CGAATTCGTT TGTTGCGGGC AGATGAAGAA
ATTGAACTTG CTAGAAAAAT CGCTGACTTA TTAGAATTAG AACGGGTGCG GGAGCGACTG
TCAGAAAAGT TAGAACGTGA TCCCCGTGAC AGTGAATGGG CAGAAGCCGT ACAATTGCCC
TTGCCAGCCT TTCGTTATCG CTTGCACATT GGCCGCAGAG CAAAAGATAA AATGGTGCAA
TCAAACTTGC GCCTTGTGGT TTCAATTGCC AAGAAATATA TGAATCGTGG TTTATCATTC
CAAGACTTGA TTCAGGAAGG TAGTCTGGGT TTGATTCGTG CGGCTGAGAA GTTCGATCAT
GAGAAAGGTT ATAAGTTCTC CACCTACGCT ACTTGGTGGA TTCGCCAGGC AATTACTAGA
GCGATCGCTG ACCAATCCCG CACCATCCGC CTACCAGTCC ACCTCTACGA AACCATCTCC
CGCATTAAGA AAACCACCAA GTTGCTGTCT CAAGAAATGG GACGCAAACC TACGGAGGAA
GAAATCGCTA CTCGTATGGA AATGACCATC GAGAAACTGC GGTTCATCGC TAAATCTGCT
CAGTTACCAA TTTCATTAGA AACACCCATT GGTAAAGAAG AAGATTCTCG CTTAGGTGAT
TTTATCGAAT CCGACGGCGA AACCCCAGAA GACCAGGTTT CTAAAAACCT GCTAAGGGAA
GATTTAGAAA AAGTCCTCGA TAGCCTTAGC CCTCGTGAAC GCGATGTTCT CCGCCTACGC
TACGGTTTAG ATGACGGTCG GATGAAGACT TTAGAGGAAA TTGGACAAAT CTTCAACGTC
ACCCGTGAAC GGATTCGGCA AATCGAAGCC AAAGCCCTCC GTAAATTACG CCACCCCAAC
CGCAACAGCG TCCTGAAAGA ATATATTCGT TAG
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| Protein sequence | MNQANNVLDS IYQPDLEIMN QPEIELDDLL IEEDEDLLLA DDGDIDEFLE PQTDEDDAKS
GKAAKSRRRT QSKKKHYTED SIRLYLQEIG RIRLLRADEE IELARKIADL LELERVRERL
SEKLERDPRD SEWAEAVQLP LPAFRYRLHI GRRAKDKMVQ SNLRLVVSIA KKYMNRGLSF
QDLIQEGSLG LIRAAEKFDH EKGYKFSTYA TWWIRQAITR AIADQSRTIR LPVHLYETIS
RIKKTTKLLS QEMGRKPTEE EIATRMEMTI EKLRFIAKSA QLPISLETPI GKEEDSRLGD
FIESDGETPE DQVSKNLLRE DLEKVLDSLS PRERDVLRLR YGLDDGRMKT LEEIGQIFNV
TRERIRQIEA KALRKLRHPN RNSVLKEYIR
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