Gene Ava_1322 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1322 
Symbol 
ID3682968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1619736 
End bp1621796 
Gene Length2061 bp 
Protein Length686 aa 
Translation table11 
GC content48% 
IMG OID637716660 
Productribonuclease II 
Protein accessionYP_321841 
Protein GI75907545 
COG category[K] Transcription 
COG ID[COG0557] Exoribonuclease R 
TIGRFAM ID[TIGR00358] VacB and RNase II family 3'-5' exoribonucleases 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.61831e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAGAAGG GGACGCTAGT TGAATTTAGG GTTCAAGGCG ATCGCCGTTT GGGCGTGGTA 
GACCGCCCAG ATGGAAAAAC CCGTTGGTTT GTGGTAGATG AACGTGGTCA ATCCCACAGC
CTCGCGCCTA GACAAATTAC ATATACAGTT AACGGCAACA CTTATAAGCC ATCAGATATT
GACAGGTTTT TGGAGGAAGT CAAGCCTTAT CTCGACCCCT CCAGCTTAGA AGTGGCCTGG
GAATTACTAG TAGAAGATGG AGAAACAGTC ACGCCATCCC AAATGGCTAA TTTACTGTTT
TCAGAATCCA ACTCAGCTCC CAGTTATGCT GCTCATTGCC TGTTATCAGA TGACAAGTTA
TATTTTAAAC AAAAAGGTGA TGCTTACGAA CCGAGAACGG CGGCTCAAGT AGCAGAGCGC
AAACACCAGA TAGAAGTAGA AGCCCTCAAA GCTAGGGGAC AGCAGGAATT TTTGACGCGT
GTAGAGCAAG CACTCCAAGG GGAAGCAGTA GAGTGGCAGC GTCATGACCG CCAACGCCTA
GAAGGATTGG AAAAGTATGG AACACTTTTG GCTGACATTG TAAAGGTGGG GCTAAACTAT
GATTCTCTGG CGCGTGCCTA TCCTCCCCCA GCCCTAGTTT TAGAAACAAT GAATATGCTG
GGGCGGCCCG CGACCCCCCA AGGCGCTTTT CAATTACTGG TAGATTTGGG GTGGTGGAGT
GCCACGGAAA ACTTGTTCCT GCGTCGTTCG TCAATTCCAG TTCAGTTTCC TAGCAAGGTA
TTAGAAGTGG CGCAACAGCG TTTGGATTTC CCGCCGACAG ACTTAGACAC AAATCGCCTC
GATTTGACTC ACCTGAAGGT CTACACAGTT GACGATGAAA GCACCACTGA AATAGATGAT
GGATTGAGTT GGGAAAAACT CCCCGATAGC CGGGAAAGAT TGTGGGTGCA TATCGCCGAC
CCTACCCGCT ACTTAGCACC AGAAGATGAT TTAGACCTAG AAGCCAGGAA GCGAGGTAGC
ACAGTTTATT TACCCACGGG AATGATCCCC ATGTTCCCCG AAATATTGGC AACTGGCCCC
ATGAGTTTGG TACAGGGAAG AGTTTGCTGT GCTTTGAGTT TTGGGGTTGT CTTAGATGAG
ACAGGGGCAG TAGAAGACTT TACTATTCAT CCTAGTTTAA TTAAGCCTAC CTATCGCCTC
ACCTACGAAG ATGTAGATGA AATGTTGGAA TTAGGCGTAC AAGCAGAACC AGAAATTGCG
GCGATCGCTA CTTGGGCAAC TAAGCGCAAA TCTTGGCGGT ATAATCAAGG CGCGATCAGC
ATCAATATGC CGGAGGCGAT GATTAAAGTC AAAAATGACG ATATCAGTAT CGACATTTTA
GATGATTCCC GTTCCCGGCA GTTAGTAGCA GAAATGATGA TTCTAGCCGG GGAAGTGGCA
GCACGTTACG GTCAAGTACA CAACATACCC TTGCCCTTTC GTGGTCAACC ACAACCGGAA
TTACCCCCAG AAGACGAATT ACTCAGACTG CCAGCCGGAT TTGTCCGTGC TTGTGCCATG
CGGCGTTGTA TGCCCAAGAG TGAAATGAGT ATTACTCCTG TGCGTCACGC TGGTTTAGGT
TTGGATACCT ACACCCAAGC TACATCTCCG ATTCGCCGCT ACAGTGACTT ACTCACGCAC
TTTCAACTCA AAGCCCACCT GCGGGGTGAA GTTCCTCCCT TTACCGCCGA AGAACTCAAG
GAAGTGATGA TGACCGTCAC CAGCACCACC CAAGAGCTGA CAATGGTAGA ACGTCAGACG
AATAGATACT GGGCGTTGGA ATATTTGCGC CGCCATCCAG AAGAGATTTG GCAAGTAACA
GTCCTCATGT GGTTACGGGA GGATAGTAAC TTAGCACTAA TATTGTTAGA AGATTTGGGT
TTACAATTAC CGATGGTATT CAAGCGATCG GTGAGACTCG GTGAACAGGT ATTAGTAAAA
GTTAGTATCT CCGATCCGCA AAAGGATGTA ATTCAGTTCC AAGAAATAAT TTATCAAGAA
GCCCAAACAG CAGCGAATTA G
 
Protein sequence
MEKGTLVEFR VQGDRRLGVV DRPDGKTRWF VVDERGQSHS LAPRQITYTV NGNTYKPSDI 
DRFLEEVKPY LDPSSLEVAW ELLVEDGETV TPSQMANLLF SESNSAPSYA AHCLLSDDKL
YFKQKGDAYE PRTAAQVAER KHQIEVEALK ARGQQEFLTR VEQALQGEAV EWQRHDRQRL
EGLEKYGTLL ADIVKVGLNY DSLARAYPPP ALVLETMNML GRPATPQGAF QLLVDLGWWS
ATENLFLRRS SIPVQFPSKV LEVAQQRLDF PPTDLDTNRL DLTHLKVYTV DDESTTEIDD
GLSWEKLPDS RERLWVHIAD PTRYLAPEDD LDLEARKRGS TVYLPTGMIP MFPEILATGP
MSLVQGRVCC ALSFGVVLDE TGAVEDFTIH PSLIKPTYRL TYEDVDEMLE LGVQAEPEIA
AIATWATKRK SWRYNQGAIS INMPEAMIKV KNDDISIDIL DDSRSRQLVA EMMILAGEVA
ARYGQVHNIP LPFRGQPQPE LPPEDELLRL PAGFVRACAM RRCMPKSEMS ITPVRHAGLG
LDTYTQATSP IRRYSDLLTH FQLKAHLRGE VPPFTAEELK EVMMTVTSTT QELTMVERQT
NRYWALEYLR RHPEEIWQVT VLMWLREDSN LALILLEDLG LQLPMVFKRS VRLGEQVLVK
VSISDPQKDV IQFQEIIYQE AQTAAN