Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_1322 |
Symbol | |
ID | 3682968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 1619736 |
End bp | 1621796 |
Gene Length | 2061 bp |
Protein Length | 686 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637716660 |
Product | ribonuclease II |
Protein accession | YP_321841 |
Protein GI | 75907545 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0000561831 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGAGAAGG GGACGCTAGT TGAATTTAGG GTTCAAGGCG ATCGCCGTTT GGGCGTGGTA GACCGCCCAG ATGGAAAAAC CCGTTGGTTT GTGGTAGATG AACGTGGTCA ATCCCACAGC CTCGCGCCTA GACAAATTAC ATATACAGTT AACGGCAACA CTTATAAGCC ATCAGATATT GACAGGTTTT TGGAGGAAGT CAAGCCTTAT CTCGACCCCT CCAGCTTAGA AGTGGCCTGG GAATTACTAG TAGAAGATGG AGAAACAGTC ACGCCATCCC AAATGGCTAA TTTACTGTTT TCAGAATCCA ACTCAGCTCC CAGTTATGCT GCTCATTGCC TGTTATCAGA TGACAAGTTA TATTTTAAAC AAAAAGGTGA TGCTTACGAA CCGAGAACGG CGGCTCAAGT AGCAGAGCGC AAACACCAGA TAGAAGTAGA AGCCCTCAAA GCTAGGGGAC AGCAGGAATT TTTGACGCGT GTAGAGCAAG CACTCCAAGG GGAAGCAGTA GAGTGGCAGC GTCATGACCG CCAACGCCTA GAAGGATTGG AAAAGTATGG AACACTTTTG GCTGACATTG TAAAGGTGGG GCTAAACTAT GATTCTCTGG CGCGTGCCTA TCCTCCCCCA GCCCTAGTTT TAGAAACAAT GAATATGCTG GGGCGGCCCG CGACCCCCCA AGGCGCTTTT CAATTACTGG TAGATTTGGG GTGGTGGAGT GCCACGGAAA ACTTGTTCCT GCGTCGTTCG TCAATTCCAG TTCAGTTTCC TAGCAAGGTA TTAGAAGTGG CGCAACAGCG TTTGGATTTC CCGCCGACAG ACTTAGACAC AAATCGCCTC GATTTGACTC ACCTGAAGGT CTACACAGTT GACGATGAAA GCACCACTGA AATAGATGAT GGATTGAGTT GGGAAAAACT CCCCGATAGC CGGGAAAGAT TGTGGGTGCA TATCGCCGAC CCTACCCGCT ACTTAGCACC AGAAGATGAT TTAGACCTAG AAGCCAGGAA GCGAGGTAGC ACAGTTTATT TACCCACGGG AATGATCCCC ATGTTCCCCG AAATATTGGC AACTGGCCCC ATGAGTTTGG TACAGGGAAG AGTTTGCTGT GCTTTGAGTT TTGGGGTTGT CTTAGATGAG ACAGGGGCAG TAGAAGACTT TACTATTCAT CCTAGTTTAA TTAAGCCTAC CTATCGCCTC ACCTACGAAG ATGTAGATGA AATGTTGGAA TTAGGCGTAC AAGCAGAACC AGAAATTGCG GCGATCGCTA CTTGGGCAAC TAAGCGCAAA TCTTGGCGGT ATAATCAAGG CGCGATCAGC ATCAATATGC CGGAGGCGAT GATTAAAGTC AAAAATGACG ATATCAGTAT CGACATTTTA GATGATTCCC GTTCCCGGCA GTTAGTAGCA GAAATGATGA TTCTAGCCGG GGAAGTGGCA GCACGTTACG GTCAAGTACA CAACATACCC TTGCCCTTTC GTGGTCAACC ACAACCGGAA TTACCCCCAG AAGACGAATT ACTCAGACTG CCAGCCGGAT TTGTCCGTGC TTGTGCCATG CGGCGTTGTA TGCCCAAGAG TGAAATGAGT ATTACTCCTG TGCGTCACGC TGGTTTAGGT TTGGATACCT ACACCCAAGC TACATCTCCG ATTCGCCGCT ACAGTGACTT ACTCACGCAC TTTCAACTCA AAGCCCACCT GCGGGGTGAA GTTCCTCCCT TTACCGCCGA AGAACTCAAG GAAGTGATGA TGACCGTCAC CAGCACCACC CAAGAGCTGA CAATGGTAGA ACGTCAGACG AATAGATACT GGGCGTTGGA ATATTTGCGC CGCCATCCAG AAGAGATTTG GCAAGTAACA GTCCTCATGT GGTTACGGGA GGATAGTAAC TTAGCACTAA TATTGTTAGA AGATTTGGGT TTACAATTAC CGATGGTATT CAAGCGATCG GTGAGACTCG GTGAACAGGT ATTAGTAAAA GTTAGTATCT CCGATCCGCA AAAGGATGTA ATTCAGTTCC AAGAAATAAT TTATCAAGAA GCCCAAACAG CAGCGAATTA G
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Protein sequence | MEKGTLVEFR VQGDRRLGVV DRPDGKTRWF VVDERGQSHS LAPRQITYTV NGNTYKPSDI DRFLEEVKPY LDPSSLEVAW ELLVEDGETV TPSQMANLLF SESNSAPSYA AHCLLSDDKL YFKQKGDAYE PRTAAQVAER KHQIEVEALK ARGQQEFLTR VEQALQGEAV EWQRHDRQRL EGLEKYGTLL ADIVKVGLNY DSLARAYPPP ALVLETMNML GRPATPQGAF QLLVDLGWWS ATENLFLRRS SIPVQFPSKV LEVAQQRLDF PPTDLDTNRL DLTHLKVYTV DDESTTEIDD GLSWEKLPDS RERLWVHIAD PTRYLAPEDD LDLEARKRGS TVYLPTGMIP MFPEILATGP MSLVQGRVCC ALSFGVVLDE TGAVEDFTIH PSLIKPTYRL TYEDVDEMLE LGVQAEPEIA AIATWATKRK SWRYNQGAIS INMPEAMIKV KNDDISIDIL DDSRSRQLVA EMMILAGEVA ARYGQVHNIP LPFRGQPQPE LPPEDELLRL PAGFVRACAM RRCMPKSEMS ITPVRHAGLG LDTYTQATSP IRRYSDLLTH FQLKAHLRGE VPPFTAEELK EVMMTVTSTT QELTMVERQT NRYWALEYLR RHPEEIWQVT VLMWLREDSN LALILLEDLG LQLPMVFKRS VRLGEQVLVK VSISDPQKDV IQFQEIIYQE AQTAAN
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