Gene Ava_1321 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1321 
SymbolrpsR 
ID3682967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1619306 
End bp1619521 
Gene Length216 bp 
Protein Length71 aa 
Translation table11 
GC content43% 
IMG OID637716659 
Product30S ribosomal protein S18 
Protein accessionYP_321840 
Protein GI75907544 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0238] Ribosomal protein S18 
TIGRFAM ID[TIGR00165] ribosomal protein S18 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value7.49157e-08 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTATT ACCGTCGTCG CCTGTCTCCA ATTAAGCCTG GAGAACCGAT TGATTACAAA 
GACGTTGATT TGTTGCGTAA ATTTATCACT GAGCGTGGTA AAATACTACC CCGAAGAATT
ACTGGGCTAA CCGCTAAACA ACAGCGAGAA TTGACATTAG CAATTAAACG TTCCCGTCTT
GTGGCTTTGT TGCCATTTAT CAATGCGGAA GGCTAA
 
Protein sequence
MSYYRRRLSP IKPGEPIDYK DVDLLRKFIT ERGKILPRRI TGLTAKQQRE LTLAIKRSRL 
VALLPFINAE G