Gene Ava_1281 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1281 
Symbol 
ID3683121 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1570487 
End bp1572550 
Gene Length2064 bp 
Protein Length687 aa 
Translation table11 
GC content45% 
IMG OID637716619 
Productribonuclease E and G 
Protein accessionYP_321800 
Protein GI75907504 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1530] Ribonucleases G and E 
TIGRFAM ID[TIGR00757] ribonuclease, Rne/Rng family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.95712e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAAAAC AAATTATTAT CGCGGAGCAG CATCAAATCG CTGCTGTATT TTCGGAAGAC 
CAAATACAAG AACTCGTTGT AGCCACAGGC CATCATCAAA TCGGTGATAT CTACTTAGGT
GTAGTAGAAA ATGTATTACC AGGTATTGAT GCAGCTTTTG TCAACATCGG AGATCCAGAA
CGTAATGGTT TTATTCATGT AACGGATTTA GGCCCTTTAC GACTCAAGCG AACAGCAGCA
GCAATTACGG AATTATTAGC ACCACAACAA AAAGTTTTGG TGCAGGTAAT GAAAGAGCCA
ACGGGAACAA AAGGCCCAAG GCTCACAGGT AATATCACTT TACCCGGACG TTATGTGGTA
CTGATGCCCT ATGGTAGGGG TGTAAATTTA TCGAGGCGGA TTAAGAGTGA AAGTGAACGT
AACCGTTTAC GAGCATTAGC AATTTTAATT AAACCTGCTG GCATGGGTTT GCTGGTGCGT
ACAGAAGCAG AAGGCAAGCC AGAAGAAGCA ATCATCGAAG ATTTGGAAGT ACTGCAAAAG
CAATGGGAAG CCATTCAACA AGAGGCACAG TCAACTCGTG CGCCAGCACT CCTGAATCGG
GACGATGATT TTATCCAGCG CGTATTACGT GATATGTATG GTGCGGATGT AAATCGGATT
GTCGTCGATT CCAGTACTGG TTTGAAGCGA GTCAAACAGT ATTTGCAGAA CTGGAGTGGC
GGTCAGACAC CACAAGGATT GTTGATTGAC CATCACCGCG ATCGCTCCCC CATTTTAGAA
TATTTCCGGA TCAATGCCGC AATTAGAGAA GCGCTCAAAC CAAGAGTAGA CCTACCTTCT
GGCGGTTATA TCATTATTGA GCCAACAGAA GCATTAACTG TCATAGATGT CAACTCAGGT
TCCTTCACGC GATCGGCCAC AGCCAGAGAA ACTGTTTTGT GGACCAACTG TGAAGCCGCA
ACAGAAATTG CTCGTCAGCT ACGTCTGCGG AATATCGCTG GGGTAATCGT CGTTGATTTT
ATTGACATGG AATCACGCCG TGACCAGTTA CAAGTTCTCG AACACTTTAA TAAAGCCCTC
CGCGCAGATA AAGCTCGTCC CCAAATTGCC CAACTTACAG AGCTAGGTTT AGTAGAACTG
ACTCGCAAAC GGCAAGGGCA AAATATTTAT GAATTGTTTG GTGACACTTG CCCAGCCTGC
GGTGGTTTAG GACATACAGT CCGCTTACCC GGAGAAACGG AGAACCGCTT ACCTACTCCA
GCAGCAGAAA TTCCAGAACG TTTTGTATCT CTGCCTACAC GAGAGCCTCG TTTACCAACT
GCACGCATCA GCGAACCACG AGAAACCTAC GATGGATTTG GTGAAGCGTT TGAAAACGAC
TCTGACTTGG GTGCTTTAAA TTTAATTAAT CATCCTAGCT ATCAAGAACT GAACGATAAC
AATAAACGTC GCGCCCGTAC CCGTCGCAGT CGGATTGGCA TCAATGGTAC AAATGGCAAA
GATGAACAAA GAATTACTGC CAACCCACTA GCTTTTATCA ATGAGTCAGA TTTAGACCTT
GATGGAGATG TTGAATTAAG CGCTCCACCA GAGTTACCCA CACCCAACCT GGGAAAATCT
GGCTGGATTG AAAGAGCAGA ACGGACTAAG GTTATTAAAA CAGAGCCAGT TAAGCCAGTG
GTGGAACCAC CGGAGATTAA GACTGTAGAA ATGACTCCAG AAGAACAAGA TATTTTTGCT
CTTATGGGGA TTTCTCCGCT AATTAAATTA GAGCAGGAGG TGAAAAATCC TAAATCCGTC
ATTATTAACA TTGTTCAACC GGGACAAACA CCAACTATAC CGACTGAAAT AACTCCGGAG
CCGGTGGCTA AGACAACACC AAGCGTTGAA GTGAGTACAC CAAAAGTAAA GCTGGAATCT
AAGTCTGTGT CGGTAACGGC AACTGAACCA ATAAAGTTGA CAGAAACGAC GGAAGAATCT
GAAGTGAATG CCGCTAGCAC TGCTAACCGT CGCCGTCGTC GTCGTTCTTC CGCTTCCGAC
TCAGATACGG GAGAGGATAG TTAA
 
Protein sequence
MPKQIIIAEQ HQIAAVFSED QIQELVVATG HHQIGDIYLG VVENVLPGID AAFVNIGDPE 
RNGFIHVTDL GPLRLKRTAA AITELLAPQQ KVLVQVMKEP TGTKGPRLTG NITLPGRYVV
LMPYGRGVNL SRRIKSESER NRLRALAILI KPAGMGLLVR TEAEGKPEEA IIEDLEVLQK
QWEAIQQEAQ STRAPALLNR DDDFIQRVLR DMYGADVNRI VVDSSTGLKR VKQYLQNWSG
GQTPQGLLID HHRDRSPILE YFRINAAIRE ALKPRVDLPS GGYIIIEPTE ALTVIDVNSG
SFTRSATARE TVLWTNCEAA TEIARQLRLR NIAGVIVVDF IDMESRRDQL QVLEHFNKAL
RADKARPQIA QLTELGLVEL TRKRQGQNIY ELFGDTCPAC GGLGHTVRLP GETENRLPTP
AAEIPERFVS LPTREPRLPT ARISEPRETY DGFGEAFEND SDLGALNLIN HPSYQELNDN
NKRRARTRRS RIGINGTNGK DEQRITANPL AFINESDLDL DGDVELSAPP ELPTPNLGKS
GWIERAERTK VIKTEPVKPV VEPPEIKTVE MTPEEQDIFA LMGISPLIKL EQEVKNPKSV
IINIVQPGQT PTIPTEITPE PVAKTTPSVE VSTPKVKLES KSVSVTATEP IKLTETTEES
EVNAASTANR RRRRRSSASD SDTGEDS