| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1243 |
|---|
| Symbol | |
|---|
| ID | 3683181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 1530336 |
|---|
| End bp | 1531715 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637716581 |
|---|
| Product | photosynthetic II protein PsbC |
|---|
| Protein accession | YP_321762 |
|---|
| Protein GI | 75907466 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01153] photosystem II 44 kDa subunit reaction center protein (also called P6 protein, CP43), bacterial and chloroplast
[TIGR03041] chlorophyll a/b binding light-harvesting protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.2113 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTAACGC TCTCTAATAC CTTAGGCGGC GGACGCGACC AAGAATCATC CGGTTTTGCT
TGGTGGTCTG GTAATGCGCG CCTAATCAAC TTATCCGGTA AACTGCTGGG CGCTCACGTT
GCTCATGCTG GCTTGATTGT GTTCTGGGCC GGAGCGATGA CCTTATTTGA AGTCGCTCAC
TTCATTCCAG AAAAACCGAT GTACGAGCAG GGTTTAATCC TGTTACCTCA CGTCGCTACC
CTTGGTTGGG GCGTTGGCGT TGGTGGTGAA GTTATCGATA CTTTCCCCTA CTTTGTTGTT
GGTGTACTCC ACCTGATTTC TTCTGCCGTA TTAGGCTTTG GTGGTATTTA CCACGCCGTC
CGTGGTCCAG AAACCTTAGA AGAGTACTCC TCTTTCTTTG GTTATGACTG GAAAGATAAG
AACAAGATGA CCAATATCAT CGGCTTCCAC CTGATCATCC TGGGATGTGG TGCGTTGCTG
TTGGTATTGA AAGCAATGTT CTTTGGTGGT GTCTATGACA CCTGGGCCCC TGGTGGTGGT
GATGTACGTG TAATTACTAA TCCCACACTG AACCCAGCTG TAATCTTCGG TTATTTGCTT
AAATCTCCCT TCGGTGGCGA AGGTTGGATT GTTAGCGTTA ATAACATGGA AGATGTCATT
GGCGGACACA TCTGGATCGC TTTAATTTGT ATTTCTGGTG GTATTTGGCA CATCTTCACC
AAGCCTTTTG GTTGGGCGCG TCGTGCGTTT ATCTGGTCTG GTGAAGCATA TCTTTCCTAC
AGCTTGGGCG CTTTGTCCTT AATGGGCTTT ATCGCTTCCT GTATGGTTTG GTACAACAAC
ACTGTTTACC CCAGCGAATT CTTCGGCCCA ACTGGCCCTG AAGCTTCTCA AGCTCAAGCT
TTAACCTTCT TGGTTCGTGA CCAACGCTTA GGTGCTAACG TTGGTTCTGC CCAAGGCCCT
ACAGGTTTGG GTAAATACTT GATGCGCTCT CCTTCTGGTG AAATCATCTT CGGTGGTGAA
ACCATGCGCT TCTGGGACTT CCAAGGCCCT TGGTTAGAGC CTCTACGTGG CCCTAACGGT
CTTGACCTAG ATAAAATCAA GAATGATATT CAGCCTTGGC AAGCACGTCG CGCTGCTGAA
TACATGACCC ACGCTCCTCT AGGTTCCTTG AACTCTGTGG GTGGTGTGGC TACAGAAATT
AACTCTTTCA ACTACGTATC CCCTCGTGCG TGGTTGGCTA CTTCTCACTT TGTGTTAGGC
TTCTTCTTCT TAATTGGTCA CTTGTGGCAC GCTGGACGCG CTCGCGCTGC TGCTGGCGGT
TTCGAGAAGG GTATTGACCG TGAGAATGAA CCAGCAATGT CTATGGGCGA CCTCGACTAA
|
|---|
| Protein sequence | MVTLSNTLGG GRDQESSGFA WWSGNARLIN LSGKLLGAHV AHAGLIVFWA GAMTLFEVAH
FIPEKPMYEQ GLILLPHVAT LGWGVGVGGE VIDTFPYFVV GVLHLISSAV LGFGGIYHAV
RGPETLEEYS SFFGYDWKDK NKMTNIIGFH LIILGCGALL LVLKAMFFGG VYDTWAPGGG
DVRVITNPTL NPAVIFGYLL KSPFGGEGWI VSVNNMEDVI GGHIWIALIC ISGGIWHIFT
KPFGWARRAF IWSGEAYLSY SLGALSLMGF IASCMVWYNN TVYPSEFFGP TGPEASQAQA
LTFLVRDQRL GANVGSAQGP TGLGKYLMRS PSGEIIFGGE TMRFWDFQGP WLEPLRGPNG
LDLDKIKNDI QPWQARRAAE YMTHAPLGSL NSVGGVATEI NSFNYVSPRA WLATSHFVLG
FFFLIGHLWH AGRARAAAGG FEKGIDRENE PAMSMGDLD
|
|---|
| |