Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_1189 |
Symbol | |
ID | 3683327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 1463809 |
End bp | 1465380 |
Gene Length | 1572 bp |
Protein Length | 523 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637716526 |
Product | secretion protein HlyD |
Protein accession | YP_321708 |
Protein GI | 75907412 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.981456 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCAAC TCAATAGCGA TCGCCGTAAC GGTAATAATA GTAATGGGAA GCAAAATAAG ATTATCAAAA TTGATGATCA AGCTTCACCA CAGGCAAGCA AAGCTTTAGT TAAATTTAAT CAAAACGACT TTGAGCAATC TGTTGTACTG CGCCAATCTC CTCTTTGGTC ACGCACAATT ATGCTCACCC TGATAGGGTT AGCTTGTGTA GGTATTGGTT GGGCATATTT TGCCAAAATC GAACAGGTAG TACCAGCTAC TGGTCAACTG AAACCAGAAG GTACAGTGAA AGAAGTACAA GCACCAGTTA ATGGTGTAGT GAGAGAAGTT TTTGTTAAAA ATGGAGAGAC AGTTAATAAA GGTGATCTAC TATTAACCTT TGATCAAGTT ACCACCGTCG CCCAGTTAAA TTCATTAGAA AAAGTTAGAC GTGCCTTAAC TCAAGAAAAT CAGACATATC GCCGCTTGAT GAGATCAACA GGTGGCATTG CTTCTGAACT AGAATTTGTT CGTAGTCGGT TACCACAAGA AGCAGCTTTT CTGTTGAGAA ATCGTGCAGC GCTAGTTGCA GAAAATGAAT TGCTACGTAC TCAATTAAAT AATGCTACCA CGGGTATAGG TTTAGATAGT GACGAACAAA AACAGCTAAA AGTTGCCAAA ACTGAATTAG AGTCTCGTGC AGCCGCCGCA GGACTGGAAG TTTCCAAAAT TGAAAGACAA CTAACTCAAA CAACGGTAAA ACTCCAAGAT ACTCAATCTA GCTTGGCAAT CCAACAACAG ATTTTAGATA AGATTAAAAT CTTAGCAGAA GAAGGTGGTA TTTCTCAGCT ACAGTATCTC AATCAACAAC AGCAGGTACA GACTACAGCA GCAGAAGTTG CCCAATTAGT TGAAGAACAG AAACGCCTGC AATTTGATAT TGAAAAAAAC CAGCAGCAAG TTACTAATAC TGTCGCTACT ACTGATAAAA ATATTTTAGA GAAAATTGCT GATAACAAAA AACGCATTGC AGAAATTGAT AGTCAATTCA TGAGAATTGT CCTAGATAAT GAACGTAATT TAGCCGATAT CACAAGCAGA ATTTCTCAAG CTCAACAGGA ACTTAAATAC CAAGAATTAC GCGCGCCTGT AGCTGGTACA GTCTTTGATT TGAAAGCAAA TAATACTGGA TTTGTGGCAA ATCCTACACA AAAATTATTG CAAATCGTCC CTAATGAAAA CTTTATTGCT GAGGTTTTCA TCACCAATAA AGATATTGGT TTTGTCCGCA AAGGAATGAA AGTAGATGTC AGAATTGACT CTTTTCCTTT CAGCCAGTTT GGTGATATCA AAGGTGCAAT AATTGATATT GGCTCAGATG CGTTGCCACC AGACGAAATA TATAAGTTTT ATCGCTTCCC TGCCAGAATT AAACTAAATC AACAATACTT ACAAATTCAA GATAAGCAGA TTTCCTTGCA GTCGGGTATG TCAATCAGCG CTAATATCAA AGTTAGGGAA GAACGCACAG TCATGAGTCT GTTTACGGAA ATGTTTACCA ATCAAGTTGA TAGTTTAAAA CAGGTGCGTT AA
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Protein sequence | MTQLNSDRRN GNNSNGKQNK IIKIDDQASP QASKALVKFN QNDFEQSVVL RQSPLWSRTI MLTLIGLACV GIGWAYFAKI EQVVPATGQL KPEGTVKEVQ APVNGVVREV FVKNGETVNK GDLLLTFDQV TTVAQLNSLE KVRRALTQEN QTYRRLMRST GGIASELEFV RSRLPQEAAF LLRNRAALVA ENELLRTQLN NATTGIGLDS DEQKQLKVAK TELESRAAAA GLEVSKIERQ LTQTTVKLQD TQSSLAIQQQ ILDKIKILAE EGGISQLQYL NQQQQVQTTA AEVAQLVEEQ KRLQFDIEKN QQQVTNTVAT TDKNILEKIA DNKKRIAEID SQFMRIVLDN ERNLADITSR ISQAQQELKY QELRAPVAGT VFDLKANNTG FVANPTQKLL QIVPNENFIA EVFITNKDIG FVRKGMKVDV RIDSFPFSQF GDIKGAIIDI GSDALPPDEI YKFYRFPARI KLNQQYLQIQ DKQISLQSGM SISANIKVRE ERTVMSLFTE MFTNQVDSLK QVR
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