Gene Ava_1172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1172 
Symbol 
ID3683368 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1440517 
End bp1441869 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content44% 
IMG OID637716509 
Productdivalent cation transporter 
Protein accessionYP_321691 
Protein GI75907395 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG2239] Mg/Co/Ni transporter MgtE (contains CBS domain) 
TIGRFAM ID[TIGR00400] Mg2+ transporter (mgtE) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value9.87618e-08 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCACAC AGGATGTTCG CATTGCGCTC ATGGATGTTG CTGATTTAAA CCAGCTCAAG 
TGGGATTTAA ATCGGTTACA ACCTGTAGAT GTAGGCGAGT ATATTACTCA ATTGCCAGAA
AAGCAGCGAG CGATCGCCTT TCGTCTCCTC AACAAAAATC AGGCAATTGA TGTATTTGAA
TATTTGCCGA CAGAAGTTCA GGAAGAACTA ATTAACTCCT TACACGATGC ACAGGTGGTG
CAACTTGTGG AGGAAATGAG TCCCGATGAA CGGGCAGAAT TATTTGATGA ACTACCGGCT
GGTGTCATCA AGCGGTTATT ACGAGAACTC AGTCCCGAAC AAAGACAAGC AACCGCCACT
ATTCTTGGTT ATCCCGAAGG TACAGCCGGG CGGGTGATGA CTACTGAATA TGTGCGTTTG
CGTCAAGGTT TGACGGTGGG AGAAGCCCTG AGTAAGATTC GCCGTCAGGA CGAAGACAAG
GAAACAATCT ACTACGCCTA TGTTACAGAT GACAACCGCA AACTAGTGCG GGTTGTTTCC
TTACGACAAT TGTTATTTAC CTTTCCCGAT GTTTTGATTC GTGATATTGC GAGCGATCGC
GTTGTTAAGG TCAGAACTGA TACACCCCAA GAAGAAGTCG CTCAAATTAT GAAGCGCTAC
GACTTAATTG CTATCCCTGT AGTTGATCGG GAAGAGCGAT TAGTGGGTAT TATTACTATT
GATGATGTAG TCGATATTTT AGAAGAAGAA GCAACGGAAG ATATTCAAAA GTTAGCTGGG
GTCAGTGGTG ATGAAGCCGC TTTGTCTTCT CCACTACGGA CTATCTGCAA CCGCTTACCC
TGGTTGTTAG GAATAATGGC TTTGTATATT GGTGCAGCTA GTGCGATCGC CCCTTTTCAA
TCAATCATTG CTGCTGTACC AGTATTAGCC GTGATTATGC CCATATTTTC CAATACAGGG
GGAACAGTCG GTATCCAAGC ATTAACAGTT ACCATTCGTG GTTTAGGTAT AGGCGAAGTC
ACGCCCAAAG ATACTATGAA AATCTTGCGG AAAGAAATTT TCGCAGGTTT AGGGACGGCT
GTAGTGTTAG CAATGACCAT GTTTGCCCTT TCCTTAATTT GGGCTAAACC CCAAGAACGA
TGGGTAGCGG TAATTGCCGG TACAGTTATG GCAACTAATA CAATAGTGGC TGTAACACTT
GGTACTTTGT TGCCAATGGG TTTGAAACGC CTAAAATTAG ATCCTGCCCT AGTCAGTGGT
CCATTAGTCA CCACAATGCT TGACACCATC GGCTTTTTAA CCTTCTTAAC TCTGATTTCT
ACAGCCTTAA ATGTGTTTCA CTTGCCAGCT TAG
 
Protein sequence
MLTQDVRIAL MDVADLNQLK WDLNRLQPVD VGEYITQLPE KQRAIAFRLL NKNQAIDVFE 
YLPTEVQEEL INSLHDAQVV QLVEEMSPDE RAELFDELPA GVIKRLLREL SPEQRQATAT
ILGYPEGTAG RVMTTEYVRL RQGLTVGEAL SKIRRQDEDK ETIYYAYVTD DNRKLVRVVS
LRQLLFTFPD VLIRDIASDR VVKVRTDTPQ EEVAQIMKRY DLIAIPVVDR EERLVGIITI
DDVVDILEEE ATEDIQKLAG VSGDEAALSS PLRTICNRLP WLLGIMALYI GAASAIAPFQ
SIIAAVPVLA VIMPIFSNTG GTVGIQALTV TIRGLGIGEV TPKDTMKILR KEIFAGLGTA
VVLAMTMFAL SLIWAKPQER WVAVIAGTVM ATNTIVAVTL GTLLPMGLKR LKLDPALVSG
PLVTTMLDTI GFLTFLTLIS TALNVFHLPA