Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_1164 |
Symbol | |
ID | 3683360 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 1426867 |
End bp | 1428117 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637716501 |
Product | RNA polymerase sigma factor SigC |
Protein accession | YP_321683 |
Protein GI | 75907387 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.115543 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAGCAA CATCTTTTTA CGCAGATGCC GCCTACAATA CCCAAAAATC CCGCCAGGCT TTAGACCCTG ATATTGCCAT TGATGACAGT GATTTGTCGG TGGATGAGAT CCAAGAATTG GAGATAGCTG CTGCTGATCC CGCTACTTTT GGTGCTAGCG CTAACCGTCG TAGTACAGAC TTAGTACGTC TATACCTTCA GGAAATCGGT CGAGTCCGTT TGTTAGGACG GGACGAAGAA GTTTCTGAAG CTCAAAAAGT CCAGCGTTAC TTAAAGTTGC GGGTAGTGCT AGCTAATGCT GCCAAACAGG GAGATGAAGT TGCTACTCCT TATCTGCATT TAATTGAAGT TCAAGAGCGT CTAGCATCAG AACTTGGCCA TCGTCCTTCC TTGGAAAGAT GGGCTGCTAC TGCTGGTATC AACCTATGTG ACCTGAAGCC AATTTTATCG GAAGGTAAAC GTCGCTGGGC AGAAATTGCC AAGATGACGG TGGAAGAATT GGAGAAAATG CAATCTCAAG GTCTTCAGTC AAAAGAACAC ATGATTAAGG CTAATTTGCG CTTAGTTGTG TCTGTGGCTA AAAAATATCA AAATCGTGGT TTAGAATTAT TAGATTTAGT TCAAGAAGGC ACTCTCGGCT TGGAACGAGC TGTAGAGAAA TTTGATCCAA CTAAGGGATA TCGTTTTAGT ACCTATGCCT ACTGGTGGAT TCGCCAAGGG ATTACAAGAG CGATCGCTAC TTCTAGTCGT ACGATTCGCC TCCCTGTTCA TATTACAGAA AAATTAAACA AAATTAAAAA GGCTCAACGC AAAATCGCTC AAGAAAAAGG TCGCACTCCT ACTTTAGAAG ACCTAGCAAT TGAGTTAGAT ATGACACCTA CCCAAGTGCG GGAAGTTTTA TTAAGAGTAC CTCGTTCTGT TTCTTTAGAA ACCAAGGTAG GTAAAGATAA AGACACTGAG TTGGGAGAAC TATTAGAGAC TGACGGCGTA ACTCCTGAAG AAATGTTAAT GCGGGAATCT CTACAAAGAG ACTTGCAACA TTTATTAGCT GATTTAACTA GCCGTGAACG TGATGTCATC TTGATGCGTT TTGGTTTAGC TGATGGTCAT CCTTACTCAT TAGCAGAAAT TGGCCGCGCT CTGGATTTAT CACGGGAGCG AGTACGCCAA ATCGAATCTA AGGCCTTGCA AAAGCTCCGC CAACCGAAGC GCCGCAACCT TATCCGTGAC TATTTGGAAT CTCTGAGTTA G
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Protein sequence | MPATSFYADA AYNTQKSRQA LDPDIAIDDS DLSVDEIQEL EIAAADPATF GASANRRSTD LVRLYLQEIG RVRLLGRDEE VSEAQKVQRY LKLRVVLANA AKQGDEVATP YLHLIEVQER LASELGHRPS LERWAATAGI NLCDLKPILS EGKRRWAEIA KMTVEELEKM QSQGLQSKEH MIKANLRLVV SVAKKYQNRG LELLDLVQEG TLGLERAVEK FDPTKGYRFS TYAYWWIRQG ITRAIATSSR TIRLPVHITE KLNKIKKAQR KIAQEKGRTP TLEDLAIELD MTPTQVREVL LRVPRSVSLE TKVGKDKDTE LGELLETDGV TPEEMLMRES LQRDLQHLLA DLTSRERDVI LMRFGLADGH PYSLAEIGRA LDLSRERVRQ IESKALQKLR QPKRRNLIRD YLESLS
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