| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1156 |
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| Symbol | |
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| ID | 3683351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | - |
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| Start bp | 1412992 |
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| End bp | 1415916 |
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| Gene Length | 2925 bp |
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| Protein Length | 974 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637716492 |
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| Product | Type I site-specific deoxyribonuclease HsdR |
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| Protein accession | YP_321675 |
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| Protein GI | 75907379 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.159677 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAAAC CAGGGGAACA GAAAACTGTT CAAAGCAGGA TAATTACTTA CGCTCAAGAA
ATTGGCTGGA CATTTGTATC TCGTGAAGAA GCGGAAACCA GACGGGGTTT TAATAATCAC
AGTGGTAACA TTCAAGAGAA GGCACAACAA GCATCCCTGT TTTTTGACGA TACCCTCTAT
CAAAAAGTCC GCCAGTTTAA CCCCAAGTAT ACCGAAGCTC AAGGCGTACT TATTGCGCTA
CTGAGTAACC TACCTGCCGA CATCTACGGA AATAGAGACT TCCTAACTTA TCTCCGCAAC
CAAGGCAAAT ATTTTTATGC CCCTGAAAAT CGGGAACTCG ATCTAAAACT CATCAACTAC
GATGACACCA CCGAAAACTC CTACGAAGTA ACGGAAGAAT ACTACATTCA TAACGGCAAG
TACGGTACAC GGGAAGATGT AGTCTTTTTA ATCAACGGTA TTCCTATCCT CGTCATCGAA
TGCAAAAACG CTACTAAAGA TGAAGCGATC GCATTAGGTG TTGATCAAAT TCGTCGCTAC
CACACCGAAA CACCAGAGTT ATTCGTTCCC CAGATGATTT TTACCGCCAC TGAAGCCATT
GGCTTTTCGT ATGGGGTGAC GTGGAATATT GTCAGGCGCA ACATTTTTAA CTGGAAAGCA
GAACAAATCG GTCAACTAGA AGCAAAAATT AAGAGTTTTT GTCAACCTAA CTATATTCTC
CAATTCCTGC AAAATTATAT TCTCTTTGCA GAGAAAGAAG AAACTCTGCA AAAATTTATT
CTGCGTCAAC ACCAAACCAC CGCAGTTGAA AAGGTAATTG AACGCTGTCA CGATCCTGAA
CACAGCAAAG GACTTGTCTG GCATACCCAA GGCAGTGGTA AGACTTTCAC AATGATTAAG
ACGGCGGAAA TGCTCTTTAA AGCCCCACAG AGCGATAAAC CGACAATTCT GCTGATGATT
GACCGCAACG AGCTAGAAGA CCAAATGCTC AGAAACCTAA TTAACTTAGG ACTGAATAAC
GTTCAACACG CTGATCGCAT TACCACCCTT AATCAACTAC TAAAAGATGA TTATCGTGGC
ATTATCGTCA CCATGATCCA CAAATTCCGC GATATGCCTG CCAATATTAA TCTAAGAAAA
AATATTTATA TTCTGATTGA TGAGGCACAC CGCACCACCG GAGGAGATTT AGGAACTTTC
TTAATGGCAG GACTCCCTAA TGCCACTTTT ATCGGATTTA CTGGTACACC TGTAGATAAA
ACTAGCTACG GTAAAGGCAC ATTTAAAACC TTCGGCACAG ACGATAAAAA GGGGTATCTG
CATAAATATT CCATTGCAGA AAGTATTGAA GACGGAACAA CACTACCCCT TTACTACAAT
ATTGCTCCCA GCAAGATAAT TGTGCCAAAG GAACTCATGG AAAAGGAGTT TCTCAACTTG
GCAGAAACTG AGGGGATTAG CGATATTGCC GAATTAAATA AAATTTTAGA TCGTGCCGTT
AATTTAAAAA ACTTCCTCAA AGGTAATCAA AGAGTAGATC AGGTAGCAAA ATATGTTGCC
AAGCATTACA CTCAAAACGT AGAACCACTA GGTTATAAAG CTTTTTTAGT CGCTGTTGAC
CGTCCTGCCT GTGCTAAATA TAAACAAGCT TTAGATAAAT ATTTACCTCC TGAATACTCC
GCAGTTGTCT ATACCGGAAA CAATAACGAT ACTCAAGAAC TCAAAACCTA CCACCTCGAC
GACAAGACAG AAAAACAAAT CCGTAAAAAC TTCGCCAAAT TTGGAGAATA CCCCAAAATC
CTGATTGTTA CCGAGAAACT GTTGACAGGA TTTGATGCTC CCCTGCTTTA TGCCATGTAT
CTCGATAAGC CCATGCGAGA TCATACCTTG TTACAGGCGA TCGCTCGTGT GAATCGTCCC
TACGAAAGCG AAGCTCAAGA GATGGTGAAA CCGCATGGTT TTGTGCTGGA TTTTGTAGGC
ATTTTCAACA AACTAGAAAA AGCACTTGCC TTTGACAGCG ATGAAATCAA CGCTATTATC
AAAGATTTGA AACTGCTCAA AACTTTATTC AAAAATAAAA TGGAGCAGCA AGCCTCAACT
TATTTGAGCT TGATTCAGAA CAATTTTAAC GATAAAGATG TAGATGATAT TATTGAGCAT
TTTCGAGAAC AAGAACGCAG AAAAGCATTT TCTAAAGCCT ATAAAGAACT AGAAATGCTC
TATGAAGTTA TTTCCCCTGA TGCTTTCCTA CGTCCCTACA TGGACGATTA CGCCACCCTT
TCCTCTATTT ATGAAGTAAT CCGCAAAGCT TACAGCAAAA GGGTTTACGT CGATAAAGCG
TTGCAGCGCA AAACTGATGA ACTCGTACAA AAACATATTG GCACAACAGC GATCGCAACT
GTAACAGATT TTGTAGAAAT CAATGCTCAA ACCCTCGAAG TCATCAAAGA CAAGCAAGGA
GGTGAAACCA CCAAAGTCAT CAACCTCATC AAAAGCATCG AAAAAACTGC CGAAGAAAAT
CCCGATGACC CTTTTCTCAT TGCAATGGCG GAACGTGCCA AAATTGTCCA AGAAAAGTTT
GAAAATCGCC AGTCCGATAC CCAAGAAGCC TTAGATACGT TGGTTAAAGA AATTGGTGAA
AATGAGCAGC GCAAGAAAGA ACAGGCTAAA CGTGGTTTTG ACAGCTTAAC GTTTTTTGTC
TTTCAAACCC TACAGGATGC AGGTATTGAT AATCCTGAAG CAGTAAGCAA TCAAATTAAA
CAAGCTTTTA TAGAGTATCC CAATTGGCGC ATCAGTGAGG CAGAATTGAG AGAGTTGCGG
AAAGAAGTCA CCTTCGCCAT TTTTGCTGAG ATCGATGAAT TGGATCAAGT GACAGCAGTT
GTTGATAAAC TTTTTATGTT GCTAAGTCAA GCTTACTCAA GCTAA
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| Protein sequence | MPKPGEQKTV QSRIITYAQE IGWTFVSREE AETRRGFNNH SGNIQEKAQQ ASLFFDDTLY
QKVRQFNPKY TEAQGVLIAL LSNLPADIYG NRDFLTYLRN QGKYFYAPEN RELDLKLINY
DDTTENSYEV TEEYYIHNGK YGTREDVVFL INGIPILVIE CKNATKDEAI ALGVDQIRRY
HTETPELFVP QMIFTATEAI GFSYGVTWNI VRRNIFNWKA EQIGQLEAKI KSFCQPNYIL
QFLQNYILFA EKEETLQKFI LRQHQTTAVE KVIERCHDPE HSKGLVWHTQ GSGKTFTMIK
TAEMLFKAPQ SDKPTILLMI DRNELEDQML RNLINLGLNN VQHADRITTL NQLLKDDYRG
IIVTMIHKFR DMPANINLRK NIYILIDEAH RTTGGDLGTF LMAGLPNATF IGFTGTPVDK
TSYGKGTFKT FGTDDKKGYL HKYSIAESIE DGTTLPLYYN IAPSKIIVPK ELMEKEFLNL
AETEGISDIA ELNKILDRAV NLKNFLKGNQ RVDQVAKYVA KHYTQNVEPL GYKAFLVAVD
RPACAKYKQA LDKYLPPEYS AVVYTGNNND TQELKTYHLD DKTEKQIRKN FAKFGEYPKI
LIVTEKLLTG FDAPLLYAMY LDKPMRDHTL LQAIARVNRP YESEAQEMVK PHGFVLDFVG
IFNKLEKALA FDSDEINAII KDLKLLKTLF KNKMEQQAST YLSLIQNNFN DKDVDDIIEH
FREQERRKAF SKAYKELEML YEVISPDAFL RPYMDDYATL SSIYEVIRKA YSKRVYVDKA
LQRKTDELVQ KHIGTTAIAT VTDFVEINAQ TLEVIKDKQG GETTKVINLI KSIEKTAEEN
PDDPFLIAMA ERAKIVQEKF ENRQSDTQEA LDTLVKEIGE NEQRKKEQAK RGFDSLTFFV
FQTLQDAGID NPEAVSNQIK QAFIEYPNWR ISEAELRELR KEVTFAIFAE IDELDQVTAV
VDKLFMLLSQ AYSS
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