Gene Ava_1062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1062 
Symbol 
ID3678575 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1293696 
End bp1294319 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content46% 
IMG OID637716398 
ProductNAD(P)H dehydrogenase (quinone) 
Protein accessionYP_321581 
Protein GI75907285 
COG category[I] Lipid transport and metabolism 
COG ID[COG1182] Acyl carrier protein phosphodiesterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.00142617 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.37921e-06 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGCAAATA TCCTCCACAT TGATTCTAGC CCACGCGGCG ATCGCTCTAT TTCCCGTAAA 
CTCTCTTACG AGTTCCTAAC ATCTTGGAAA GATACCCATC CTGGTGATAC CGTAACTTAC
CGGGATTTAG GCCACAATCC TGTTCCCCAT GTAGATGAAC CCTGGATTGC GGCGGCGTTT
TCTTCACCAG ATTCCCACAC TCCCGAATTG AAAGCAGCAA TAGAGCTGTC TGATACCCTC
ATTGATGAAT TTCTCGCCGC CGATCGCTTC GTTTTTGGTG TGCCGATGTA TAACTTAAAT
ATACCATCGA CTTTCAAGGC GTATATCGAC CAAATAGTCC GTGTAGGACG TACCTTTAGT
GTTGATGCAA ATGGCTATAA AGGTTTAGTT GATAGCAGCA AAAAAGTACT CATTATTACC
TCGCGCGGTG GTAGTTATCC ACCAGGAACC CCCTATGCAG CCTATGACTA TCAAGAACCT
TATCTCCGTG CTATCTTAGG GTTCATGGGA CTAACAGATG TTACCTTCAT CCATGCTGAG
TCCTTGAACA TGGGCGAAGA TGCTCGTGAA AAATCTCTCG CAGATGCGAA GGATGCGATC
GCTCAAGCTG TGGCTAACTG GTAG
 
Protein sequence
MANILHIDSS PRGDRSISRK LSYEFLTSWK DTHPGDTVTY RDLGHNPVPH VDEPWIAAAF 
SSPDSHTPEL KAAIELSDTL IDEFLAADRF VFGVPMYNLN IPSTFKAYID QIVRVGRTFS
VDANGYKGLV DSSKKVLIIT SRGGSYPPGT PYAAYDYQEP YLRAILGFMG LTDVTFIHAE
SLNMGEDARE KSLADAKDAI AQAVANW