Gene Ava_1008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1008 
SymbolruvB 
ID3679920 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1217486 
End bp1218586 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content49% 
IMG OID637716343 
ProductHolliday junction DNA helicase RuvB 
Protein accessionYP_321527 
Protein GI75907231 
COG category[L] Replication, recombination and repair 
COG ID[COG2255] Holliday junction resolvasome, helicase subunit 
TIGRFAM ID[TIGR00635] Holliday junction DNA helicase, RuvB subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.28051e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00140746 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCGATCA TCTCCTCAAA AAAACAGCCC CCAGAACCCA ACGGACAGCC AAACAAGCGC 
CCGGAGTCAG CACCAGCCGC CCCTAAAGAG AAGGTTTTGC AACCTGAAGC TGCTATTGAT
GAGCAAGGTA AGCAAGAAGA AAGTATCAGA CCACAAAAAT TCGCCGACTA CATCGGACAG
AAAGACCTGA AAGACGTGCT GGACATTGCC ATCAAAGCAG CCAAGTCGCG GGGTGAAGTT
TTGGATCACT TGCTACTGTA TGGCCCGCCA GGATTGGGTA AAACAACAAT GGCAATGATA
TTAGCTTCGG AAATGGGAGT CAATTACAAA ATCACTAGTG CGCCCGCCTT AGAACGTCCC
AGAGATATTG TCGGGCTACT AGTGAACCTC AAACCCGGTG ATATTTTATT TATTGATGAA
ATCCATCGAC TTTCGCGGAT GACCGAAGAA ATTCTCTATC CGGCAATGGA AGATTACCGC
TTAGATATCA CCGTGGGTAA AGGTTCCAGC GCTCGGATTC GGAGTATACC TTTGTCTAAG
TTTACCTTAG TGGGGGCAAC AACCCGCGTA GGTGCCTTAA CTTCACCACT GCGCGATCGC
TTCGGCTTAA TTCAAAAACT GCGCTTTTAC GAAGTTGACG AACTCAGCCA AATAGTCCTG
CGGAGCGCTC AGTTACTCCA AACCCAAGTT ACCGACGACG GAGCCACAGA AATCGCCCGT
CGTTCACGGG GAACACCACG TATCGCCAAT CGCTTACTTA AACGTGTCCG CGATTATGCA
CAGGTAAAAT CCTGCACAGA AGTTAGCCAA AATATTGCTG CCGAAGCACT ACAGCTATTT
CAAGTAGACC CATGCGGACT CGATTGGACA GACCGTCGAA TGCTCAGTGT GATTATCGAG
CAATTTAACG GTGGCCCCGT AGGTTTAGAA ACAATTGCCG CCGCGACCGG AGAAGATACC
CAAACAATAG AAGAAGTATA CGAACCTTAC CTGATGCAAA TTGGCTATCT CAGTCGGACT
CCCCGTGGTC GCACAGCCAC CAAAGCCGCC TATAAACACA TGGGATTTAC GCCACCAAAC
GAGCAGCTAT CTTTACTTTA A
 
Protein sequence
MAIISSKKQP PEPNGQPNKR PESAPAAPKE KVLQPEAAID EQGKQEESIR PQKFADYIGQ 
KDLKDVLDIA IKAAKSRGEV LDHLLLYGPP GLGKTTMAMI LASEMGVNYK ITSAPALERP
RDIVGLLVNL KPGDILFIDE IHRLSRMTEE ILYPAMEDYR LDITVGKGSS ARIRSIPLSK
FTLVGATTRV GALTSPLRDR FGLIQKLRFY EVDELSQIVL RSAQLLQTQV TDDGATEIAR
RSRGTPRIAN RLLKRVRDYA QVKSCTEVSQ NIAAEALQLF QVDPCGLDWT DRRMLSVIIE
QFNGGPVGLE TIAAATGEDT QTIEEVYEPY LMQIGYLSRT PRGRTATKAA YKHMGFTPPN
EQLSLL