Gene Ava_1005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1005 
Symbol 
ID3679917 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1214166 
End bp1216106 
Gene Length1941 bp 
Protein Length646 aa 
Translation table11 
GC content43% 
IMG OID637716340 
Productmulti-sensor Signal transduction histidine kinase 
Protein accessionYP_321524 
Protein GI75907228 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.442988 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000217029 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGCACAAC CGCTAACCGT TTTAATTATT GATGATTGTG CTGAAGATCG CCAAGTTTAT 
CGCCGCTATC TCCAGCAAGA CCAAGAGCAT CACTATACAA TTCTGGAACA AGAATCAGGA
GAGGAGGCAC TGGAATTATG TCGGCAGTTG CAACCTGATG TAATTTTATT AGACTTTTTA
CTGCCAGACC AAGATGGACT AGAACTTCTG GCTGAATTAC AAAAGCTGCT GCAAGGAAGT
ATGCCAGCTA TAGTCATGTT AACGGGTTAC GGTAATGAAG CGATCGCCGT ACAAGCAATG
AAAAGTGGTG TTCATGACTA TTTAGTGAAA GAACAAACGA CAGCAGAACG TTTGCGTTCC
ACTCTTCACT CTGCAATTAT CCAAACGCGA TTACGCCAAG AACTTTCCCG GAGTCAGGAG
CAATTACACG ACAGCCAAAA ATTTATTGAA CGCATTGCAG AAACCACTCC GGGGATTTTG
TACGTTCACG ATTTAGTCGA AAAGCGGAAT GTTTATATCA ATGGTAAGGT TGGTAATTTA
TTAGGTCATA CTCCCCAAAC AATTCAAAAT TTGGGAAAAG AATTTCTCAT CACATTCATG
CACCCTGAGG ATTTAGTTCG GCTTCCGCAA GTATTTCAGC AGTTTGACTC AGCCAAAGAT
GGAGACATCA TCGAACATGA GTATAGGATG CGACACGCTG ATGGTGGATG GTGTTGGTTT
TTTAGTCGTA ATTCTGTGTT CATGAGAAAC AGTGATGGTT CACCACGCCA AATAGTCGGT
ACAGCCTTTG ATATCACCGC TCGTAAGCAA GCTGAAGAAG AACTACGCTC TAGCAATGAA
CGTTTCCGAC TAGCTGCCGC CGCCGTGAAT TCTCTCATTT ATGAATGGGA TATAAAAAAA
GGTACGGTCA CTAGGACGGA GGGATTGACC CGGATTTTAG GCTACTCTGT GGAGGAAGCC
ACCCCAAATA TTGAATGGTG GCAAGAGCAA ATTCATCCTG ACGACCAGGA CTTTTTGGTT
GAGCAATTCC AAAATCCACC TGTTAATCAA ACTCATTATA CTTTTGAATA TCGCATCCGA
CACAAAAACA ATCAGTATTT ATACGTATTA GATCAAGGGA TAATCACCAG AGATGAAAAT
GGCCAGCCAG TGCGAGTAGT CGGTAGTGCA ACCGATATTA GCGATCGCAA ACTTGCGGAA
GCAGAACGCG ACCAACTATT GCAATTAGAA AAATTAGCCC GTGCGGAAGC AGAAGCCGCC
AATCAAACGA AAGATGAGTT TGTGGCGATG GTATCTCATG ATTTGCGATC GCCATTGAAT
GCAATTCTCG GCTGGTCACA ATTGTTACGA ACTCGCCAGC TTGATGAAAG CACATTTACC
CGTGCGTTAG AAACCATTGA ACGCAACGCA CAATCACAGT CAAAACTTTT GGAGGACTTA
CTGGATATGT CTCGTATCCT CAGGGGTAAG TTACAGTTGG AGTTTTGCCT AGTGGAGTTA
CCTGCTATTA TCGGCGTAGC AATTGAGACT GCTTATCCCT CAGCCAAAGC TAAAGATATT
CATTTAAAGT CGGTGATAGA TGAATCAATT CCACTGATTC CTGGTGATAT CAATCGCTTG
TTACAAGTTT TAGGCAATCT GCTTTCAAAT GCGATTAAAT TCACACCTCC AGAAGGACAG
ATCACAGTCC AACTATCATA TACAGACTCT GAAGCTCACA TCACAGTGAT TGATACAGGT
ATTGGGATTA AGTCAGAATT TTTACCCTAC GTTTTTGAGC GCTACCGTCA AGCGGACTGC
CAACATAAAC AACATGGTTT GGGTTTAGGG TTAGCGATCG CCCGTTATCT CATAGAATTA
CACGGCGGGG CGATTCATGT GAATAGCCTG GGTGAGGGAC AAGGAACTAC TTTCACTATT
AAATTACCAT TGCACCAATA A
 
Protein sequence
MAQPLTVLII DDCAEDRQVY RRYLQQDQEH HYTILEQESG EEALELCRQL QPDVILLDFL 
LPDQDGLELL AELQKLLQGS MPAIVMLTGY GNEAIAVQAM KSGVHDYLVK EQTTAERLRS
TLHSAIIQTR LRQELSRSQE QLHDSQKFIE RIAETTPGIL YVHDLVEKRN VYINGKVGNL
LGHTPQTIQN LGKEFLITFM HPEDLVRLPQ VFQQFDSAKD GDIIEHEYRM RHADGGWCWF
FSRNSVFMRN SDGSPRQIVG TAFDITARKQ AEEELRSSNE RFRLAAAAVN SLIYEWDIKK
GTVTRTEGLT RILGYSVEEA TPNIEWWQEQ IHPDDQDFLV EQFQNPPVNQ THYTFEYRIR
HKNNQYLYVL DQGIITRDEN GQPVRVVGSA TDISDRKLAE AERDQLLQLE KLARAEAEAA
NQTKDEFVAM VSHDLRSPLN AILGWSQLLR TRQLDESTFT RALETIERNA QSQSKLLEDL
LDMSRILRGK LQLEFCLVEL PAIIGVAIET AYPSAKAKDI HLKSVIDESI PLIPGDINRL
LQVLGNLLSN AIKFTPPEGQ ITVQLSYTDS EAHITVIDTG IGIKSEFLPY VFERYRQADC
QHKQHGLGLG LAIARYLIEL HGGAIHVNSL GEGQGTTFTI KLPLHQ