| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_0830 |
|---|
| Symbol | def |
|---|
| ID | 3681848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 1016957 |
|---|
| End bp | 1017520 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637716164 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_321349 |
|---|
| Protein GI | 75907053 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.139175 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.098116 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTCTG AAATTGCTGT TGAGAAAAAA AAGTTAAAAA ATCCACCTCT GCAACTCCAC
TATTTAGGCG ATCGCGTGCT GCGTCAACCA GCAAAGCGGA TCACCAAAGT AGATGATGAA
ACCCGGCAAT TGATCCGCGA TATGCTGCAA ACGATGTACA GCAATGATGG CATTGGTTTG
GCTGCACCCC AGGTAGGAAT TAACAAACAA CTCATTGTCA TCGATTGCGA ACCTGATAAT
CCGGCGAACC CGCCACTGGT ATTAATTAAC CCCACAATTA AACAAGTCAG CCGCGAAATC
TGTAGCGCCC AAGAAGGGTG TTTGAGCATT CCGGGAGTTT ATATGGATGT CAAACGCCCA
GAAGTGGTAG AAGTTGCCTA TAAAGATGAA AATGGCCGTC CTCAAACCTT AAAAGCTACT
GACCTACTCG GACGCTGCAT TCAACACGAG ATGGATCACC TCAACGGTGT AGTATTTGTA
GACCGCGTAG ATAATTCCTT GACTTTGGCA CAAGAGTTAT CTAAAAATGG CTTCTCGTAT
CAGGCAGTGA AACCAGTAGC ATAG
|
|---|
| Protein sequence | MPSEIAVEKK KLKNPPLQLH YLGDRVLRQP AKRITKVDDE TRQLIRDMLQ TMYSNDGIGL
AAPQVGINKQ LIVIDCEPDN PANPPLVLIN PTIKQVSREI CSAQEGCLSI PGVYMDVKRP
EVVEVAYKDE NGRPQTLKAT DLLGRCIQHE MDHLNGVVFV DRVDNSLTLA QELSKNGFSY
QAVKPVA
|
|---|
| |