Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_0830 |
Symbol | def |
ID | 3681848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | - |
Start bp | 1016957 |
End bp | 1017520 |
Gene Length | 564 bp |
Protein Length | 187 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637716164 |
Product | peptide deformylase |
Protein accession | YP_321349 |
Protein GI | 75907053 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.139175 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.098116 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTTCTG AAATTGCTGT TGAGAAAAAA AAGTTAAAAA ATCCACCTCT GCAACTCCAC TATTTAGGCG ATCGCGTGCT GCGTCAACCA GCAAAGCGGA TCACCAAAGT AGATGATGAA ACCCGGCAAT TGATCCGCGA TATGCTGCAA ACGATGTACA GCAATGATGG CATTGGTTTG GCTGCACCCC AGGTAGGAAT TAACAAACAA CTCATTGTCA TCGATTGCGA ACCTGATAAT CCGGCGAACC CGCCACTGGT ATTAATTAAC CCCACAATTA AACAAGTCAG CCGCGAAATC TGTAGCGCCC AAGAAGGGTG TTTGAGCATT CCGGGAGTTT ATATGGATGT CAAACGCCCA GAAGTGGTAG AAGTTGCCTA TAAAGATGAA AATGGCCGTC CTCAAACCTT AAAAGCTACT GACCTACTCG GACGCTGCAT TCAACACGAG ATGGATCACC TCAACGGTGT AGTATTTGTA GACCGCGTAG ATAATTCCTT GACTTTGGCA CAAGAGTTAT CTAAAAATGG CTTCTCGTAT CAGGCAGTGA AACCAGTAGC ATAG
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Protein sequence | MPSEIAVEKK KLKNPPLQLH YLGDRVLRQP AKRITKVDDE TRQLIRDMLQ TMYSNDGIGL AAPQVGINKQ LIVIDCEPDN PANPPLVLIN PTIKQVSREI CSAQEGCLSI PGVYMDVKRP EVVEVAYKDE NGRPQTLKAT DLLGRCIQHE MDHLNGVVFV DRVDNSLTLA QELSKNGFSY QAVKPVA
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