Gene Ava_0793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_0793 
SymbolmurD 
ID3680732 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp971948 
End bp973315 
Gene Length1368 bp 
Protein Length455 aa 
Translation table11 
GC content48% 
IMG OID637716122 
ProductUDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 
Protein accessionYP_321312 
Protein GI75907016 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase 
TIGRFAM ID[TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0233019 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAAAG CCCATGTAGT TGGATTAGGA AAGTCCGGTG TTGCTGCGGC GAGATTGTTG 
AAACGGGAAG GTTGGGAGGT AGTGCTAAGC GATCGCAATA CCTCCGATAC CCTCCTAAAA
CAGCAACAAG AACTCGCTAA AGAACAAATC ACAGTTGAAT TAGGGTATTC GCTAGATTTT
GCTGGTGCTT TACCTGATTT GATTGTTGTC AGTCCCGGCG TTCCTTGGGA CATTCCCGCC
TTAGTCAAAG CGCGAGAATT GGGCATAGAA ACTATCGGCG AAATGGAATT GGCTTGGCGA
CATTTAAAGT CCTTGCCTTG GGTAGGAATT ACCGGCACTA ATGGCAAAAC CACCACCACC
GCCTTAATCG CCGCTATCTT TCAAGCAGCA GGATTCGATG CCCCCGCCTG CGGTAACATC
GGCTATGCAG CTTGTGAAGT TGCCTTAGCA GCAACGCCCC CAGACTGGAT AATTGGGGAA
ATGAGCAGCT ATCAAATAGA ATCTTCCCTT ACCTTAGCCC CCCACATTAG TATCTGGACA
ACCTTCACCC CAGACCACCT AGCCCGCCAC AAAACGTTAG AAAACTATTA CGACATCAAA
GCCAAGTTAT TACGTCAATC CCATCTACAA GTGTTCAATG GTGATGATGC TTACCTATCT
AAAATAGGTG CAAGTCATTG GCCGGATGCC TATTGGACAA GTGTGAAAGG GAAAGATTAC
CTAATTGGTG ACAAAGGCTT TTATATTGAA GATGGCTGGG TGGTAGAACA ATTACAGCCA
AACTCCTCGC CTCAAAGAAT TGTTGCAGCT GAAGCCTTAC GCATGGTAGG GGCGCACAAC
CTGCAAAATC TCCTCATGGC AGTAGCCGCA GCCCGTTTAG CAGATATTCC CCCCAATGCC
ATTGACAAGG CGGTGCGAGA ATTTCCAGGG GTTGCCCATC GCTTGGAACA TATCTGCACT
TGGCAAGGCA TCGACTTTAT CAACGACAGC AAAGCCACCA ACTACGATGC GGCGGAAGTA
GGTCTAGCAT CGGTGAAAAG CCCAGTGATT TTGATTGCTG GTGGTGAAGC CAAACCAGGG
GATGATGCAG CTTGGTTAGC GAAAATCCAA GGGCAAACAT CAGCTGTATT ACTCATTGGC
AACGCTGCAC CAGCATTTGC CCAACGCCTA CAAGAAATCG GCTATAGCAA TTATGAAATC
GTGGAGACGA TGGAACAAGC GGTAAGGCGA TCGCTAGACT TAGCTAAACA CCATCAAGCA
CCCGTAGTCT TACTATCCCC AGCCTGCGCT AGCTTTGACC AATACCCCAA TTTTGAAGCA
CGGGGCGATC ATTTTCGTCA ATTGTGTCTG GAATTGGTAG GGTCGTAA
 
Protein sequence
MSKAHVVGLG KSGVAAARLL KREGWEVVLS DRNTSDTLLK QQQELAKEQI TVELGYSLDF 
AGALPDLIVV SPGVPWDIPA LVKARELGIE TIGEMELAWR HLKSLPWVGI TGTNGKTTTT
ALIAAIFQAA GFDAPACGNI GYAACEVALA ATPPDWIIGE MSSYQIESSL TLAPHISIWT
TFTPDHLARH KTLENYYDIK AKLLRQSHLQ VFNGDDAYLS KIGASHWPDA YWTSVKGKDY
LIGDKGFYIE DGWVVEQLQP NSSPQRIVAA EALRMVGAHN LQNLLMAVAA ARLADIPPNA
IDKAVREFPG VAHRLEHICT WQGIDFINDS KATNYDAAEV GLASVKSPVI LIAGGEAKPG
DDAAWLAKIQ GQTSAVLLIG NAAPAFAQRL QEIGYSNYEI VETMEQAVRR SLDLAKHHQA
PVVLLSPACA SFDQYPNFEA RGDHFRQLCL ELVGS