Gene Ava_0522 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_0522 
Symbol 
ID3682352 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp657981 
End bp658499 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content43% 
IMG OID637715850 
ProductWD-40-like beta propeller repeat-containing protein 
Protein accessionYP_321041 
Protein GI75906745 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAAAC GTATTTTTAT ATTTGCTTGT ACAACCTTAT TGGGTGGATG CTTTGGCTAT 
CCTCGGTTGG TAAGTTACCC TTTCGATCCT GGGGGAAGGA GTATTAATAG TCTTGCTTCA
GAACTTAATC CTCAAATTTC GGGGCGATAT ATTGTGTTTA CAAGCGATCG CCGGGGTAGC
CAAGATGTAT ATATGTTTGA TACGCTGACT CAAAATTTGG TAGATTTGCC TGGGTTAAAT
GCTTTAGATA CGATCGCCTC TCATCCCAGT GCTTCGGCAG ATGGTCGTTA TGTAGTATTT
GCTGCTAGTC GCCAAGGACG ATCAGCTATT TTTATTTATG ACAGAGAAAC ACGGCAATTA
CGGAATTTGA CAAATAATTT ACAAGCAGAA GTCCGCAACC CCACCATTAG CGCTGATGGG
AATGCGATCG CTTTTGAGTC TAGCAATAAT GGCCAGTGGG ATGTTTTAGT TTATAACCGT
TCTGGGCAAC CCGTGAATGT GCCTCAAGAT CCCCGATGA
 
Protein sequence
MIKRIFIFAC TTLLGGCFGY PRLVSYPFDP GGRSINSLAS ELNPQISGRY IVFTSDRRGS 
QDVYMFDTLT QNLVDLPGLN ALDTIASHPS ASADGRYVVF AASRQGRSAI FIYDRETRQL
RNLTNNLQAE VRNPTISADG NAIAFESSNN GQWDVLVYNR SGQPVNVPQD PR