Gene Ava_0348 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_0348 
Symbol 
ID3682722 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp446643 
End bp448334 
Gene Length1692 bp 
Protein Length563 aa 
Translation table11 
GC content34% 
IMG OID637715676 
ProductTPR repeat-containing protein 
Protein accessionYP_320869 
Protein GI75906573 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.216855 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00958266 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCGAGGAA GAGTTTTTTT TTACCTAAGT CAGAAATTAT ACAGTGAGGG CAGATGGCAA 
GAAGCGATCG CCCCATTTCA AAAACTGATA GAATTAAACC AAGGTAGTGT AGATATTTAC
TGGAATTTAA GCCAGTGCTA CAGAAATTTA AATTTACTAG AGCAATATTT TCAAACTCTA
GAGCAAGGAA TCCAAAATTA CCCTACAGAC GCTCGGCTGT ACTTTACCTT AATTATTGAT
TTGCGGCGCA ATGGACGTAC TCAAGAAGCA ATTGAGTATG CAGAGAAAGC TTGCCAATAT
TTACCGAATG ATTATACTTT TCAAATTCTC AAATATTTAA CTGTTCCCAC TATTTATAAT
AATCCAGAAG AAATATTATT GTATCGTCAA CGCTATACTC AAGGTTTACA GAATTTAATT
GCACAAACCA GTCTGCAAAC TATTGAAGAC AAAGAAAATG CTTTGTCTGG TATTAGTAGA
TTGACGAATT TTTATCTATC TTATCAAGCT CAAAATGATG TAGATTTACA ACGTCAATAT
GGAAAGTTAG TCCATGAAAT TATGTCAGCT AACTTTCCTC AATGGATAGT CCCTTTATCC
ATGCCTAAAC TTGAACCACA TCAAAAAATT CGGATTGGTT ATGCTTCCCA TTACCTGCAT
TCTTATAGTG GAACACTGTG GTTAACTGGT TGGTTAAAAT ACTGTAATCA TAGCAATTTT
GAAATTTACT GTTATTACAC AGGTAATGAA CCAGATGCAA TAACAGATAA ATTTAGAGAA
TATAGTGATT ATTTCTACCA TATTCCTTAT AATTTATCGG CTGTTTGTGA ACAGATAATT
ACTGATAAAT TACATATTTT AGTTTATCCT GAAATTGGAA TGAATCCTCA AAATCTGCTT
ATGGGTGCTT TGCGACTCGC ACCTGTACAG TGCGTAGCTT GGGGACATCC AGTGACAACT
GGTTTATCTA CAATTGATTA CTTTTTATCT AGTGACTTAA TGGAAGCTGA AAATGCCCAA
GAACATTATT CAGAAAAATT AATTCGCCTA CCTAATATTG GAGTTTCTTA CCCTAAACCA
TACATCCCAC TAGTTCTGAA AACTCGTGCT GATTTTGGCT TGTCAGATGA TGATATTCTC
TATTTATGCT GCCAAGCTCC GTTTAAATAT TTACCGCAAT ATGATTTTAT TTTTGCAGAA
ATAGCGTCTC GTATACCGCA AGCAAAATTT ATATTTTTAC GTGGTACTTT GCTTCAAGAA
AGACTACAAA AAGCTTTTGG TAATTTGGGG CTAAAATTTG AGGATTACTG CGTGTTTTTG
AATATTCCCG AAAGACTAGA CTATCTAATG ATTAACTTAC TTTCAGATAT TTATTTAGAT
ACGTTTACAT GGTCTGGTGG TAATACTACC TTAGAAGCGA TCGCTTGTAA TCTTCCTATT
GTTACTTGTC CTGGTGAATT TATGCGAGGT CGTCACTCTG ATAGTTTTTT GAAAATGTTG
GGAGTGACAG ATACTATTGC TCAAAATGAA GGGGAATATA TTGATATTGC TGTTAAATTA
GGGCAAAATC CTGCTTGGCG ACGGGAGATT TCAGAACGCA TTAGTCAGCG TCATGACAAA
TTATTTGATG ATCAAGTTTG TGTTACTGGT TTGGAAGAAT TTTATAAACA AGTTGTTGAA
TTAAGTTCGT AG
 
Protein sequence
MRGRVFFYLS QKLYSEGRWQ EAIAPFQKLI ELNQGSVDIY WNLSQCYRNL NLLEQYFQTL 
EQGIQNYPTD ARLYFTLIID LRRNGRTQEA IEYAEKACQY LPNDYTFQIL KYLTVPTIYN
NPEEILLYRQ RYTQGLQNLI AQTSLQTIED KENALSGISR LTNFYLSYQA QNDVDLQRQY
GKLVHEIMSA NFPQWIVPLS MPKLEPHQKI RIGYASHYLH SYSGTLWLTG WLKYCNHSNF
EIYCYYTGNE PDAITDKFRE YSDYFYHIPY NLSAVCEQII TDKLHILVYP EIGMNPQNLL
MGALRLAPVQ CVAWGHPVTT GLSTIDYFLS SDLMEAENAQ EHYSEKLIRL PNIGVSYPKP
YIPLVLKTRA DFGLSDDDIL YLCCQAPFKY LPQYDFIFAE IASRIPQAKF IFLRGTLLQE
RLQKAFGNLG LKFEDYCVFL NIPERLDYLM INLLSDIYLD TFTWSGGNTT LEAIACNLPI
VTCPGEFMRG RHSDSFLKML GVTDTIAQNE GEYIDIAVKL GQNPAWRREI SERISQRHDK
LFDDQVCVTG LEEFYKQVVE LSS