Gene Ava_0290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_0290 
Symbol 
ID3682879 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp367948 
End bp368496 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content42% 
IMG OID637715618 
Productpentapeptide repeat-containing protein 
Protein accessionYP_320811 
Protein GI75906515 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.560216 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGCTA ATAAACTCCT AGAGTTATAT AACGCAGGAG AACGAAAATT CCACAGAGCA 
AATCTGCATC AAGCTAACCT TTATGCTGTT GATTTGAGGG GGGCAAATTT TGCCGAAGCT
GATTTAAGTG GAGCCAACCT TAGTCAAGCT AACTTGAGTG GATGTAATCT CAGTCGTGCT
AATTTAACTG ATGCAGACTT GAGTGGAGCT AACTTGAGTG GAGCTAACTT GAGTGAAGTC
AACTTCATCG GTGCAGATTT AATTAGCACC AATTTAAAAC AAAGCAATCT CAGTCGAGCA
GATTTACGCG GTGCCAATTT AATTTTGGCC AATTTATTCA GTGCTAACCT GAGTGAAGCG
GAAATGAGTG GTGCTGATTT GAGTGGCGCT AATCTCAAGC AAGCAAACTT AATTGGTAGC
AACGTCATGG AAGCAGAATT GAAGGGGGCA AATTTCTCTG GAGCTGTCAT TACAGAGCAA
GAAATCACTG GTAGAGTTTT GCGCTTAGGT CTCTCTCACA GATGGATAAC TTGGGCTGGT
TGTCATTGA
 
Protein sequence
MDANKLLELY NAGERKFHRA NLHQANLYAV DLRGANFAEA DLSGANLSQA NLSGCNLSRA 
NLTDADLSGA NLSGANLSEV NFIGADLIST NLKQSNLSRA DLRGANLILA NLFSANLSEA
EMSGADLSGA NLKQANLIGS NVMEAELKGA NFSGAVITEQ EITGRVLRLG LSHRWITWAG
CH