Gene Ava_0060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_0060 
Symbol 
ID3683472 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp73597 
End bp74106 
Gene Length510 bp 
Protein Length169 aa 
Translation table11 
GC content34% 
IMG OID637715387 
ProductCheW protein 
Protein accessionYP_320581 
Protein GI75906285 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0835] Chemotaxis signal transduction protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.202075 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.220201 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAACT CTCAAATTTT AATGGCTACT CTGTTACCTC AAAATAAATC AGGAGATGGT 
TATCTAAAAT TTTACCTAAA TCAGCAAAGT GCTGCTATTT TAGCGATGAA CCATACCCAA
GAAGCAGTTC TTATTTCTGC TGAATCTATT ACGCCTATGC CAAATATGCC ACATTGTGTC
TTAGGTTTAA TGAATTGGCG TAGTCGGATA ATTTGGGTAA TTGATTTACC AAAAATGCTC
AATTTAGAAT CATTAGAAAA CCGGGTACAT CAATATAGTG TCATTGTGAT TAAAGTAGAA
TCAACAATAT TGGGTTTAGT AGTACAAGAG ATTAAAGGCA TAACTAAATT TATGTCTGAT
GAAATTCGTT CACCTATTGG ACAGGTAGCA TCTAGTTTGG TTCCTTATTT ACGTGGTTGT
GTGACACAAC AGGAAGAAAA CTTTCTCGTG TTAGATGCTC AAGCAATTGT CAATTCTTCT
GTACTTATTG GTAATCAAAA TTATCAATAA
 
Protein sequence
MDNSQILMAT LLPQNKSGDG YLKFYLNQQS AAILAMNHTQ EAVLISAESI TPMPNMPHCV 
LGLMNWRSRI IWVIDLPKML NLESLENRVH QYSVIVIKVE STILGLVVQE IKGITKFMSD
EIRSPIGQVA SSLVPYLRGC VTQQEENFLV LDAQAIVNSS VLIGNQNYQ