Gene Ava_0052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_0052 
Symbol 
ID3683561 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp60546 
End bp61724 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content45% 
IMG OID637715379 
Producthypothetical protein 
Protein accessionYP_320573 
Protein GI75906277 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.806604 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAAAA CTAAAAGTTT ATTAACAGAT ATATCCCTCA AAGGATTGGA AATTGCCCCT 
TCCCAAATAC GTGGTGCAGT GCGTATTGTG CCATTACTGC GGCGAGAAGT GCGGGGTGAT
TTGCGTTTGC TGCGTCGTTC TTACGATGAA GATATGGCGG TGGTTTCCCT GGAAGGTCAA
ATAACCGAAC CGGGTATGAA ATACTTCTCC TATGTCCCTC ATGGCTTAGT CATGTCTTGG
AGTGATGACG GTAGTCCTGT AGCTAGCTTT GGCGGACAGA TGCTCAAGCC TGATGGTAAA
AGTTTTAATT CCTGTTGTGC AAGTGTGCGG TTAATGCACC GCATGGCGAA GCGAGAATCA
AGGAATCAAT TGAGATTTTT ACCTTTGCAC TTAGCAATGG AAGGTTTTTT ATCGCTGTTT
TTCTCAGGGC CAGATATTGC TTGGAGTGAG TATTCTCAAT ATGCTTTGTC TCACGGACTG
GGTTCACGCT ACGAATCATC TTTTAGCGGA CGTTACATTG CTGGGTTAGA AGATGCTTTG
CGGGTATTTG AGATTCATGA AAGACAAGTG GGTGTATTGG TATTTGTCGC TGAAGCTTTA
GCCTCTGCTT TTGTCGTTCC CACACCTGAA GACTACCGCG CTTTGCATAC CAGTCTTTTA
GAGGATTTTT ATGGTGAACT AATTTACGAA TACAGCTTAA TGTACGATGT AACTTTTCTA
ATGGCTACAT CTGTAGATGA TGCCCAGATT AATAGTTTGA CAGATTTAAG TGGAGCGATC
GCCCAAATGC GATCAGATTG GGCTGCATTC CAAGGATTTA TGGCGGAAGG ATTGCTACAG
CGCCAACTCC AATCCCAGAG AGTGTACACG GCTGGCCCAT TCCAACTGCA ACGGTTCATC
ACTAACCTGC AACCCAAAGA AGAAAACCAT ATCGGTGAGG CGATTATTCG AGATAACGGA
GAGTTAGAAT ATCTCAAAAC TTACCGTCTA TCAGCCGCCC AAACTCGTCG AGTGTACTTA
CTCAGCCAAC TAGCTGAATA TAACTGGAAT ATCGATGCTA CAGCCAAAGC CTTGGGACAC
ACCCGCGATG AACTAGTTTC TCGCCTTGAA GCTTCAGGTT TTGGTTATCT ACTCAATCAA
CAAGTACGTG ACGCAGCACG GAAAAAAGCG AAAAGGTGA
 
Protein sequence
MSKTKSLLTD ISLKGLEIAP SQIRGAVRIV PLLRREVRGD LRLLRRSYDE DMAVVSLEGQ 
ITEPGMKYFS YVPHGLVMSW SDDGSPVASF GGQMLKPDGK SFNSCCASVR LMHRMAKRES
RNQLRFLPLH LAMEGFLSLF FSGPDIAWSE YSQYALSHGL GSRYESSFSG RYIAGLEDAL
RVFEIHERQV GVLVFVAEAL ASAFVVPTPE DYRALHTSLL EDFYGELIYE YSLMYDVTFL
MATSVDDAQI NSLTDLSGAI AQMRSDWAAF QGFMAEGLLQ RQLQSQRVYT AGPFQLQRFI
TNLQPKEENH IGEAIIRDNG ELEYLKTYRL SAAQTRRVYL LSQLAEYNWN IDATAKALGH
TRDELVSRLE ASGFGYLLNQ QVRDAARKKA KR