| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_C0232 |
|---|
| Symbol | |
|---|
| ID | 3678031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007412 |
|---|
| Strand | + |
|---|
| Start bp | 272499 |
|---|
| End bp | 273746 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637715312 |
|---|
| Product | C-5 cytosine-specific DNA methylase |
|---|
| Protein accession | YP_320506 |
|---|
| Protein GI | 75812889 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0270] Site-specific DNA methylase |
|---|
| TIGRFAM ID | [TIGR00675] DNA-methyltransferase (dcm) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.547554 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000406028 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAACTCAA CAGCAACAAA CAAAAAAATA GCTATTAGCC TATTCTCCGG GGTGGGTGGA
TTTGATTTGG GATTTGAAGC AGCAGGATTT GAAATCGCGA TCGCCATTGA TAATAATCCC
ATCGTCCTAG CAACATACCA ACATAATTTC CCGCACGCCA CAGTCTTGTG CAAAGACATT
CGGGAGGTGA CGGCGCAAGA AATACGTGCC TGTATTCAGG CGAAGTATGT AGATTGGGAC
GGGGAAATTC ATACCGTTTT TGGTGGCCCA CCATGCCAAG GATTTAGCGT TGCTGGACTG
CAAAATGTTG AGGATGAGAG AAACTCGTTG GTGGGGGAGT TTGTTCGCCT GGTGTTGGAA
CTCAATCCTC TTGCGGCAAT CATGGAGAAT GTGCCAGGGA TTGAGAATCA GAAGTTTGGC
TGCATTACTG CTAACCTCCA AGCAGTGCTA GAAGAACATT ATTTTCTCTC AAAGTGGAAC
CTCACCGCTT CAGATTACGG AGTTCCGCAA GCTAGAAAAA GGGTGTTTTT TGTTGCATCT
AAGTTTGGAG AAATTATACC GCCGGAGCAT CAACCTCAAC ATACAGTTAG AGATGCGATC
GCGGACTTGT TGCCAGTCCC CCTACTCCCC AAGCAAAACA CTCAAGAATG GCATCCAGAT
TGGGTGAAGG GAGAATATGC TAAGTATCTT GAAAAAATAT TCCCAAATTT TGGTATAGTA
ACTAACATTG AGACGGGATT CGCAGCGACA ACACATACAC CAGAAGTAAT TCAGCAATTC
ATCAACACTC CCCCAGGTGC AAGGGAAGCT AAATCCAAAT CAAAGAAGCT GCAATGGGAT
GGATTCTGCG TGACGTTAAG AGCGGGGAGT GGCAACCGCA CTGCATTGCG TCCCCTGCAT
CCAGAACAGC CACGAGTTAT CTCAGTTAGA GAAGCTGCTC GTTTGCACAG CTACCCCGAT
TGGTTTAATT TTAGTGAGGC AATACTCCAC GCCCAAAGAG AAATCGGAAA TTCGGTACCC
CCATTGCTTG CATATGCTGT GGGAATGCAA GTTAAAGAAC ATCTAGAATG CAATATCAAT
TATCAGATTA AGTGCCAAAA TAGGCATTTT TGCCAATTTT TAACAATTTA TTGCAATTTT
AAGAATATAT TTATTTTTGT GAATGAAATG CTGTCTTTAA GCGGGTTGTC CATTAAAGAA
TTATTTGTCA ATTTTAAAAA ATTAATGTCA GGCAGTGTCA GAGGCTAA
|
|---|
| Protein sequence | MNSTATNKKI AISLFSGVGG FDLGFEAAGF EIAIAIDNNP IVLATYQHNF PHATVLCKDI
REVTAQEIRA CIQAKYVDWD GEIHTVFGGP PCQGFSVAGL QNVEDERNSL VGEFVRLVLE
LNPLAAIMEN VPGIENQKFG CITANLQAVL EEHYFLSKWN LTASDYGVPQ ARKRVFFVAS
KFGEIIPPEH QPQHTVRDAI ADLLPVPLLP KQNTQEWHPD WVKGEYAKYL EKIFPNFGIV
TNIETGFAAT THTPEVIQQF INTPPGAREA KSKSKKLQWD GFCVTLRAGS GNRTALRPLH
PEQPRVISVR EAARLHSYPD WFNFSEAILH AQREIGNSVP PLLAYAVGMQ VKEHLECNIN
YQIKCQNRHF CQFLTIYCNF KNIFIFVNEM LSLSGLSIKE LFVNFKKLMS GSVRG
|
|---|
| |