Gene Ava_C0028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_C0028 
Symbol 
ID3678104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007412 
Strand
Start bp46157 
End bp46810 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content49% 
IMG OID637715112 
Producttranscriptional regulator 
Protein accessionYP_320306 
Protein GI75812689 
COG category[K] Transcription 
COG ID[COG2345] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.572077 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.204969 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACTG ATCGACCAGT AGAATCAACT AGCATTCGGA CTCGACAGGC GGTTGTCAAA 
CGGCTCAAGC AAGAAGGATC GATAGATGCG GAAACGCTCG CCTCCTACTT GAACATCACT
GCAATGGCAG TGCGGCAGCA TCTCTACGCT TTGCAAAAAG AAGGATTGGT GACGTACCAG
AAACAAGCGC GTCCAATGGG ACGACCTGCC AAGTTATGGG AGTTAACGCC TGCTGCCGAT
CGTTTTTTCC CCGATCGCTA CGCTGAGTTA ACGTTGGGTC TGATTAACTC AATGAAAGAG
GCATTTGGTG AAGAGGGATT TGATCGGCTA CTGGAAGTTA GAACTCGCGA ACAAATTCAA
GCGTATCGAG CGATCGTACC TCGCCATACT CCGCTTCAAC AGCAACTAGA AGCGTTAGCA
GCGCAGCGAA CTGAGGAAGG CTACATGGCA GAGGTCACAG ATCAAGCCGA TGGCACCTTT
CTCTTCGCTG AAAAACATTG CCCCATTTGT GCGGTGGCAA CTGCTTGTAC TGGGCTGTGT
CAGATGGAGT TAGAAATCTT TCAAGCGGCT TTAGGTGACG ATGTGAGCAT TGAACGAATT
GAACACATTT TGGCGGGCGA TAGATGTTGT GTATATCTGG TTATCAGTAC TTAA
 
Protein sequence
MKTDRPVEST SIRTRQAVVK RLKQEGSIDA ETLASYLNIT AMAVRQHLYA LQKEGLVTYQ 
KQARPMGRPA KLWELTPAAD RFFPDRYAEL TLGLINSMKE AFGEEGFDRL LEVRTREQIQ
AYRAIVPRHT PLQQQLEALA AQRTEEGYMA EVTDQADGTF LFAEKHCPIC AVATACTGLC
QMELEIFQAA LGDDVSIERI EHILAGDRCC VYLVIST