| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_B0053 |
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| Symbol | |
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| ID | 3677918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007410 |
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| Strand | + |
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| Start bp | 65809 |
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| End bp | 66759 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637714762 |
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| Product | sigma-28 |
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| Protein accession | YP_319956 |
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| Protein GI | 75812337 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCAGCC TAAGTTCTGA TTTGATACGC ATCTATTTGC AAGAAATTGG TCAGTTTCCT
TTGTTAACTT CTGATCAGGA AATAACTTAT GGCAGGCAAG TACAGCAAAT GATTGCCATC
CAAGAGCAAC AGCAGCAGCT TAGTCAACAA TTACATCGAG AACCAACAAC GGCAGAATTA
GCGAATTTCC TCAACACAAC CCAAGCCCAA GTCAATCAAA TACTTGAGCT TGGTCAACGA
GCCAAGCAAA AGATGATCAC CGCAAATTTG AGGCTGGTAG TTTCTATCGC CAAAAAATAT
CAGCGCCGTA ACTTAGAGTT CTTAGATTTA GTTCAAGAAG GTGCGATTGG CTTGCAAAGG
GGGATAGAAA AGTTTGACCC TAATCGTGGT TACAAGTTGT CAACCTACGC ATATTGGTGG
GTAACGCAAG CAATTACCAG AGCGATCGCC GAAAAATCTC GCACAGTCAG GCTACCGATT
CACGTTAACG AAAAACTCAA TCAAATTAAG AAGGTACAGC GAGAATTTTT TCAAACGCTA
GGTCGCCGTC CTAGTGTGGC AGAAATTGCC CAAAAATTAG AGTTAGAACC CAGCCAAATT
CGAGAATACC TCAAGGTTGC CAGTGGGACG ATTTCTCTAG ATTTAAAGGT AGGGGATAAC
CAGGAAACAG AATTGAGCGA ACTTTTAGCC TCGGAGGGTG TTTCGCCAAA TGAAAATACT
ACTCACGAAA TGTTGCGCCA AGACCTAAGT GATTTGTTAG CATCACTCAA ACCGATGCAA
CGCGAAGTAT TAATTTTACG CTTTGGTTTG TTGGATAATC AAGAGCAAAG TTTAGCCCAA
ATTAGCGAAA AGCTAAATCT TAGCCGAGAG CGAGTGCGCC AAATCCAGCA AAAAGCAATG
ACTGCTCTGC GTCGTCAACA GCCATCGATT GGGCAGTATC TCACTTCTTG A
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| Protein sequence | MSSLSSDLIR IYLQEIGQFP LLTSDQEITY GRQVQQMIAI QEQQQQLSQQ LHREPTTAEL
ANFLNTTQAQ VNQILELGQR AKQKMITANL RLVVSIAKKY QRRNLEFLDL VQEGAIGLQR
GIEKFDPNRG YKLSTYAYWW VTQAITRAIA EKSRTVRLPI HVNEKLNQIK KVQREFFQTL
GRRPSVAEIA QKLELEPSQI REYLKVASGT ISLDLKVGDN QETELSELLA SEGVSPNENT
THEMLRQDLS DLLASLKPMQ REVLILRFGL LDNQEQSLAQ ISEKLNLSRE RVRQIQQKAM
TALRRQQPSI GQYLTS
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