Gene Nwi_2781 details

Gene Information

• Locus tag: Nwi_2781
• Symbol: rimM
• ID: 3675758
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter winogradskyi Nb-255
• Kingdom: Bacteria
• Replicon accession: NC_007406
• Strand: +
• Start bp: 3021428
• End bp: 3021949
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 637714348
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_319386
• Protein GI: 75676965
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.00810863
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACGGCGC GCGTCTGCGT CGCCCGGATC GGCGCCGCGC ATGGCCTGCG CGGCGAGGTG 
CGGCTGTGGA CGTTCACCGA GGACCCGATG TCGGTGACGC GATACGGCCC GCTCTCGACA 
AAGGATGGCG CGCGTCAACT CGAAGTGTCG CACGCGCGCG CGGCCAGCGA TCACCTCATC 
GCAACGCTCA CCGGCGTGAC TACGCGCGAG GAGGCTGAGC GGCTCAATGG CACGGAACTC 
TACGTCGCGC GCGACAAGTT GCCCGAGACG GACGAAGGCG AATTCTACCA CGCCGACCTG 
ATCGGCCTGG CCGCATTTGA TGCGGCGGGC ACGGCGCTCG GAACGGTCGC CGCCATTCAC 
AATTTCGGCG CCGGCGACAT CATTGAGATC GCGCCGGCGC GCGGCCCGAC CCTGATGCTG 
CCGTTCACCG ACGCCGTGGT GCCCATCGTC GACATCGCAG GCGGACGCGT GGTGATCGAG 
GCGCCCGCAG AAATCGACGG CGAGGAGCCG AACTCCGTTT AG 

 

Protein sequence

MTARVCVARI GAAHGLRGEV RLWTFTEDPM SVTRYGPLST KDGARQLEVS HARAASDHLI 
ATLTGVTTRE EAERLNGTEL YVARDKLPET DEGEFYHADL IGLAAFDAAG TALGTVAAIH 
NFGAGDIIEI APARGPTLML PFTDAVVPIV DIAGGRVVIE APAEIDGEEP NSV