| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_2440 |
|---|
| Symbol | |
|---|
| ID | 3674593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | - |
|---|
| Start bp | 2661161 |
|---|
| End bp | 2663314 |
|---|
| Gene Length | 2154 bp |
|---|
| Protein Length | 717 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637714004 |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_319045 |
|---|
| Protein GI | 75676624 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00995293 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.135691 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGCA AGGCAAAGAC GCTGCAGGTC AGGGAAAAGG AAAAAGATGA CAAGGCCGCG
GATGCTCCCG AAAAGGATAC CGCGGACGCG CCGTCGCCGT TGCTCGACCT CAGCGATGCC
GCCGTCAAGA AGATGATCAA GCAGGCGAAG AAGCGCGGCT TCGTCACCTT CGACCAGCTC
AATGAAGTCT TGCCGTCCGA CACCACCTCG CCCGAGCAGA TCGAGGACAT CATGTCGATG
CTCTCCGACA TGGGCATCAA TGTGTCGGAA TCCGAGGATG CCGACAGCGA GGACGAGAAC
AAGGAAGAGG CTGACGAGGA GACCGACAAC GAGTTGGTCG AGGTCACGCA GAAGGCCGTT
ACCGAGGTCA AGAAGTCGGA GCCCGGCGAG CGCACCGACG ATCCCGTGCG CATGTATCTG
CGGGAGATGG GCACCGTCGA GCTGCTGTCG CGCGAGGGCG AGATCGCCAT CGCCAAGCGC
ATCGAGGCCG GCCGCGAGGC GATGATCGCG GGGCTGTGCG AAAGCCCGCT GACCTTTCAG
GCCATCATCA TCTGGCGTGA CGAACTCAAC GAAGGAAAGA TCTTCCTGCG CGACATCATC
GACCTCGAGG CGACCTATGC CGGACCCGAG GCCAAGAGCA GCATGAACCC GGCCTTGCTC
GGCGCGCCGG GCGGCCCCGG CGGCCAGCCG TTGTCGGCCG ACGCTTCCGA TGGCGCCTCG
GGCGAGGGCG GCGCTGAAGC CACGGTCAAC GCGCCCCCTT CGGCCCCGCC ATCTCCGACG
CCGTTCCGTG CGGCGCGCGC CGCGCCGGCG GGGGCTGCCG ACCGGGAGGA GAAGATTCCG
GGTGCGGCCG CGGAAGGCGA GATGGAGGAA GACGACTTCG ACAATCAGAT GTCGCTTGCG
GCCATTGAAG CCGAGCTGAA GCCGAAGGTG GTCGAAACAT TCGACAAGAT CGCCGACAGC
TACAAGAAGC TGCGCCGCCT GCAGGAAGCC GACATCTCCA ACCAGCTTCA GAACGAGTCG
CTCTCGCCGA ACCAGGAGCG CCGCTACAAG AAGCTGAAGG ATGAGATCAT CGTCGAGGTG
AAATCGCTGC GCCTCAACCA GGCGCGTATC GATTCGCTGG TCGAGCAGCT TTACGACATC
AACAAAAGGC TGGTCTCGTT CGAGGGGCGC CTTCTGCGGC TCGGTGACAG CCATGGCGTC
GCCCGCGAGG ATTTTCTGAG GAACTATCAG GGCTCCGAAC TCGATCCTCG CTGGCTCAAC
CGGGTGTCGA AACTCTCCGC GAAAGGCTGG AAGAATTTCG TTCACCACGA GAAGGACCGC
ATCAAGGAAC TGCGCGGTGA GATCCAGCAG CTCGCGGCGC TGACCGGGCT TGAGATCGGT
GAGTTTCGCA AGATCGTGCA GGGGGTGCAG AAGGGCGAGC GCGAGGCGCG CCAGGCCAAG
AAGGAAATGG TGGAAGCGAA CCTGCGCCTC GTCATCTCCA TCGCCAAGAA ATACACCAAC
CGCGGCCTGC AGTTCCTTGA TTTGATTCAG GAAGGCAATA TCGGCCTGAT GAAGGCGGTG
GACAAGTTCG AGTATCGTCG CGGCTATAAA TTCTCGACCT ATGCGACCTG GTGGATCCGG
CAGGCAATCA CCCGCTCGAT CGCGGATCAG GCCCGCACCA TCCGCATTCC CGTGCACATG
ATCGAGACCA TCAACAAGAT CGTGCGTACC TCGCGCCAGA TGCTGAACGA GATCGGCCGC
GAGCCGACCC CGGAGGAACT GGCGGAAAAG CTCGGAATGC CGCTGGAGAA AGTGCGCAAG
GTTCTCAAGA TCGCCAAGGA GCCGCTCTCG CTGGAGACGC CGGTGGGTGA CGAGGAAGAC
TCGCACCTCG GCGATTTCAT CGAGGACAAG AATGCGGTGC TCCCCATTGA TGCTGCGATC
CAGAGCAACC TTCGCGAAAC AACCACGCGG GTTCTGGCGT CGTTGACGCC GCGCGAGGAG
CGGGTGCTGC GCATGCGCTT CGGCATCGGC ATGAACACCG ATCACACGCT GGAGGAAGTC
GGCCAGCAGT TCTCGGTGAC GCGCGAACGC ATCCGCCAGA TCGAGGCGAA GGCGCTGCGC
AAGCTCAAGC ATCCTTCGCG GTCACGCAAG CTGCGGAGCT TCCTGGATAA TTAG
|
|---|
| Protein sequence | MASKAKTLQV REKEKDDKAA DAPEKDTADA PSPLLDLSDA AVKKMIKQAK KRGFVTFDQL
NEVLPSDTTS PEQIEDIMSM LSDMGINVSE SEDADSEDEN KEEADEETDN ELVEVTQKAV
TEVKKSEPGE RTDDPVRMYL REMGTVELLS REGEIAIAKR IEAGREAMIA GLCESPLTFQ
AIIIWRDELN EGKIFLRDII DLEATYAGPE AKSSMNPALL GAPGGPGGQP LSADASDGAS
GEGGAEATVN APPSAPPSPT PFRAARAAPA GAADREEKIP GAAAEGEMEE DDFDNQMSLA
AIEAELKPKV VETFDKIADS YKKLRRLQEA DISNQLQNES LSPNQERRYK KLKDEIIVEV
KSLRLNQARI DSLVEQLYDI NKRLVSFEGR LLRLGDSHGV AREDFLRNYQ GSELDPRWLN
RVSKLSAKGW KNFVHHEKDR IKELRGEIQQ LAALTGLEIG EFRKIVQGVQ KGEREARQAK
KEMVEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV DKFEYRRGYK FSTYATWWIR
QAITRSIADQ ARTIRIPVHM IETINKIVRT SRQMLNEIGR EPTPEELAEK LGMPLEKVRK
VLKIAKEPLS LETPVGDEED SHLGDFIEDK NAVLPIDAAI QSNLRETTTR VLASLTPREE
RVLRMRFGIG MNTDHTLEEV GQQFSVTRER IRQIEAKALR KLKHPSRSRK LRSFLDN
|
|---|
| |