| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_1769 |
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| Symbol | secD |
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| ID | 3675649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter winogradskyi Nb-255 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007406 |
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| Strand | - |
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| Start bp | 1939209 |
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| End bp | 1940807 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637713329 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_318382 |
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| Protein GI | 75675961 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.462584 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0130342 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGTACT TTACGCGGTG GAAGGCGCTG ACGATCATCG TGACCGCTCT CGCGATCTGC
CTGTGCGCCG TACCGAACTT CTTTCCGGAG GCGCAGGTCA AGACATGGCC GAAATGGGCG
CAGCGCCACC TCGTGCTAGG TCTTGACCTT CAGGGCGGCT CGTATCTGCT GCTCGAGGTC
GATTCCAACT ACGTCAAGAA AGAGAAACTC GATCAGGTTC GCGATGACGC GCGCAAGACG
CTGCGCGACG CCCGGATCGC TTATACCGGC CTTGCCGCCA AGAACGGCGC CGTCGAGGTC
CGTATCAGCA AGGAAGAGGA ATTCCAGACC GCGCTAGCCA AATTGCGTGA ACTGTCGCAA
CCGCTGGGAG GTCTGCTCGG CTCCAGCGGC CAGCGCAGCC TCGAAGTCAG CAGCGCTGAC
GGCGTGATCC GCATGACCGT GCCGCAGGCC GCCGTCACGG ACCGTATCCG CCAGTCGGTC
GAACAGTCGA TTCAGATCAT CGAGAAGCGC GTCAACGAAC TCGGCACCGT CGAGCCGTTG
ATCCAGCGTC AGGGCGCCGA CCGCATTCTG GTGCAGGTGC CGGGATTGCA GGACCCGACG
CGGCTGAAGG AAATCCTCGG CAAAACCGCC AAGATGGACT TCCGGATGGT CGATTCCAGC
ATTCCGCCTG ATCAGGCCGC ACAGGGGCGG GTGCCCGGCG ATTCCGAAGT GCTGATGAGT
TCGCAGGCGC CCAAGACGCC TTACGTGGTC CGGAAGCAGG TGCTCGTCTC CGGTGGAGAT
CTGACCGACG CCCAACCGGG GTTCGATTCG CGCACCAGCG AGCCGATCGT GACGTTCCGC
TTCAACAGCA ACGGTGCGAG AAAATTCGCG CAGGCGACGA CCGAAAACGT CGGACAGCCG
TTCGCCATCA TTCTCGACAA CGAGGTGATC TCGGCGCCGG TCATCCGCGA GCCGATTACC
GGCGGTTCGG GTCAGATCTC CGGTAATTTC ACGGTGCAGG AGGCAAATGA CCTCGCGATC
CTGCTGCGCG CCGGCGCGCT GCCGGCGCCG CTGACGATCA TCGAGGAGCG CACCGTCGGA
CCGGGGCTCG GACAGGACTC GATCGAACAG GGCGAGCTTG CCGCCTATGT CGGCTCGATC
ATGGTGATCC TGTTCATGCT GCTGACGTAC CGGTTTTTCG GGGTGATCGC GAATATCGCG
GTCGCCATCA ACGTCGCCAT GATTTTCGGC GTGCTGTCGT TGTTGAACGC GACGCTGACG
CTGCCCGGTA TAGCCGGCAT CGTTCTGACG GTGGGCATCG CCGTGGACTC GAACGTACTG
ATCTACGAGC GTATCCGCGA GGAACTGCGC GCCGGCCGCA CCGCGATTTC GGCCATCGAC
GCCGGCTTCA AGCGGGCGCT GGCGACGATT CTGGATTCCA ACATCACGAC CTTCATCGCC
GCCGCTGTGC TGTTCTATAT CGGCACCGGT CCTGTTCGCG GCTTTGCGGT GACGTTCGGC
ATCGGCATCA TTACAACGGT GTTCACCGCC TTCGAGGTGA CCCGGCTGAT CGTCGCAACG
TGGGTGCGCT GGAAGCGGCC GCAAACCGTG CCGATTTGA
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| Protein sequence | MLYFTRWKAL TIIVTALAIC LCAVPNFFPE AQVKTWPKWA QRHLVLGLDL QGGSYLLLEV
DSNYVKKEKL DQVRDDARKT LRDARIAYTG LAAKNGAVEV RISKEEEFQT ALAKLRELSQ
PLGGLLGSSG QRSLEVSSAD GVIRMTVPQA AVTDRIRQSV EQSIQIIEKR VNELGTVEPL
IQRQGADRIL VQVPGLQDPT RLKEILGKTA KMDFRMVDSS IPPDQAAQGR VPGDSEVLMS
SQAPKTPYVV RKQVLVSGGD LTDAQPGFDS RTSEPIVTFR FNSNGARKFA QATTENVGQP
FAIILDNEVI SAPVIREPIT GGSGQISGNF TVQEANDLAI LLRAGALPAP LTIIEERTVG
PGLGQDSIEQ GELAAYVGSI MVILFMLLTY RFFGVIANIA VAINVAMIFG VLSLLNATLT
LPGIAGIVLT VGIAVDSNVL IYERIREELR AGRTAISAID AGFKRALATI LDSNITTFIA
AAVLFYIGTG PVRGFAVTFG IGIITTVFTA FEVTRLIVAT WVRWKRPQTV PI
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