Gene Nwi_1423 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNwi_1423 
Symbol 
ID3675251 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter winogradskyi Nb-255 
KingdomBacteria 
Replicon accessionNC_007406 
Strand
Start bp1549906 
End bp1551048 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content63% 
IMG OID637712975 
Productlytic transglycosylase, catalytic 
Protein accessionYP_318036 
Protein GI75675615 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.371346 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.777047 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCCGG CTTCGCTGCC GTCGCGGAAA AGAACTATAG CGTTTTCGAG CGAAGCGGAA 
TCCGGTTCGC GTCAAGAAAA CGCGTCAAAA CATAAAGATA AAGTCTTTCA CCATTTCCAT
AAAACGGTGA AAGACTCTGG TATCGCCCAG CGCCTGTCGG GTCGCATACG CTGCGCATTG
GCTGCGTTTC TGATTGTCGT GGTGCCCGGT CCGGCCTCTG CGCAAGTGGG CGCGGAGACG
GCGGCCGCCC CCGAACACGC CAAACCGGAT AAGACAGACA AGCCCGATAA AGCAGTCGAG
CCGGATAAGG TAGACAAGTC CGACAAGGTC GATCTCGACA CACGCGAGGC GATCTGCCTG
ATGGTCGAAT CCGCGGCCAG GGCCGAGAGC TTACCGCTGG AGTTTTTCGC GCGCGTGATC
TGGCAGGAGA GCCGGTTTCA GCCCGATGCG GTGGGACCCA TGACGCGCAG CGGTCAGCAT
GCGCAGGGTA TCGCGCAGTT CATGCCGGGG ACGGCGAACG AGCGACGGCT GCTTGATCCT
TTCGATCCGG TGCAGGCCCT GCCCAAGTCG GCGGAATATC TGAACGAGCT GCGTGGGCGC
TTCGGCAATC TGGGACTGGC GGCCGCGGCC TATAACGCCG GTCCTCGCCG TTTGCAGGAC
TGGCTTGATG GCAAGGGATC GATGCCCGCC GAGACGCGCA ACTATGTTGT CGCCATCACG
GGATCGCCCA TCGAGGACTG GGCGGCCGCC GGCAAGAGCG GGAAACCGCC AGCCCCTTCA
GACACGACGA GTTGCCGCGA ACTGATGGCG TTGTTGAAAC GGGCACCCAA TCCGTTTGTC
ACGGGCCTCG AACAGCACGT CAAGCTCGGT GCGGACAAGC CGTGGGGGGT ACAGCTCGCG
GCGGGCTTCA ACCGCGCCGG CGCGATGGCG ATGTACGCAC GAGCCATTAG ACACCTTGGC
GCTGTGATCG GCGATCGCGA TCCGAGCCTG CTGGGCTCGC TATGGCGCAG TCGTGGCACG
CGGACATTCT ATCAGGTGCG GATCGGGGCC GATTCGCGTA TGGAGGCCGA CGATCTCTGC
AACCGGATCC GGCGCGCTGG CGGCGCCTGC CTCGTGCTGC GAAACCCGCG CGTGAAAGGG
TAG
 
Protein sequence
MHPASLPSRK RTIAFSSEAE SGSRQENASK HKDKVFHHFH KTVKDSGIAQ RLSGRIRCAL 
AAFLIVVVPG PASAQVGAET AAAPEHAKPD KTDKPDKAVE PDKVDKSDKV DLDTREAICL
MVESAARAES LPLEFFARVI WQESRFQPDA VGPMTRSGQH AQGIAQFMPG TANERRLLDP
FDPVQALPKS AEYLNELRGR FGNLGLAAAA YNAGPRRLQD WLDGKGSMPA ETRNYVVAIT
GSPIEDWAAA GKSGKPPAPS DTTSCRELMA LLKRAPNPFV TGLEQHVKLG ADKPWGVQLA
AGFNRAGAMA MYARAIRHLG AVIGDRDPSL LGSLWRSRGT RTFYQVRIGA DSRMEADDLC
NRIRRAGGAC LVLRNPRVKG