Gene Nwi_1216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNwi_1216 
Symbol 
ID3675675 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter winogradskyi Nb-255 
KingdomBacteria 
Replicon accessionNC_007406 
Strand
Start bp1336464 
End bp1337552 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content58% 
IMG OID637712766 
ProductTRAP dicarboxylate transporter- DctP subunit 
Protein accessionYP_317830 
Protein GI75675409 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGTC GTGATTTTTT GAAAGGATCG GCAGCCGGGG CCGCCGTCTC GGCCGTGGCC 
TCGCCGGCGA TCGCTCAATC GGCGCCCGAG ATCAAATGGC GCATGACGTC AAGCTTTCCC
AAATCGCTCG ACACGATCTA CGGCACGGCC GCGGTCTTTG CAAAGCAGGT CGCGGAAATG
ACCGACAACA AATTCCAGAT CCAGCTGTTC GCGGCAGGAG AGGTCGTTCC CGCGTTGCAG
GCGCTCGATG CGACGGCCAA CAATACGGTC GAGATGAGTC ACACCGCTTC GTACTATTAT
GTCGGAAAGG ATCCCACCTT CGCGATCTTC GCGTCAGTTC CGTTCGGGCT CAATGCGCGT
CAGCAGAATT CCTGGCTGTT TCAGGGCGGC GGCAATGAGC TTGCAGACGA GTTCTTCAAG
AAATTCGGCG TTGTCGGGCT TCCCTGCGGC AACACCGGCA CACAGATGGG CGGTTGGTTC
CGCAAGGAGA TCAAGACCGT GGCCGATCTG TCGGGCCTGA AGATGCGGAT CGGCGGCATT
GCCGGTCAGG TCTTGCAGAA GGTCGGCGTG ATACCGCAGC AGCTTGCCGG GGGCGACGTT
TATCCTTCGC TTGAGAAAGG TACGATCGAC GCGGCCGAAT GGGTCGGTCC ATACGACGAT
GAGAAGCTGG GTCTCCAGAA GGTCGCCAAG TATTATTATT ATCCAGGTTT TTGGGAGGGC
GGGCCGACGC TCCATGCGTT CTGCAATCTC GAGAAGTGGA ACACGTTGCC AAAGACCTAT
CAGGCGATAC TGGTGAACGC GGCGAACACG GCCAACACCT GGATGACGGC TCGCTATGAC
ATGCAGAATC CGACCGCCCT CAAGCGGCTC GTCGCAGGTG GCACGCAACT CAGGCCGTTC
AGTCACGACG TTCTCGACGC TTGCCTGAAA GCCACGAACG AGTTGTGGGG CGAGATTTCG
GCAAATAATG CGGACTTCAA GAAAGTGATC GATGCGATGC AGGCCTATCG GTCGGACGAA
TATTTGTGGT GGCAGGTGGC GGAATATACC TACGACACCT TCATGATTCG ATCACGGACG
CGGGGCTGA
 
Protein sequence
MKRRDFLKGS AAGAAVSAVA SPAIAQSAPE IKWRMTSSFP KSLDTIYGTA AVFAKQVAEM 
TDNKFQIQLF AAGEVVPALQ ALDATANNTV EMSHTASYYY VGKDPTFAIF ASVPFGLNAR
QQNSWLFQGG GNELADEFFK KFGVVGLPCG NTGTQMGGWF RKEIKTVADL SGLKMRIGGI
AGQVLQKVGV IPQQLAGGDV YPSLEKGTID AAEWVGPYDD EKLGLQKVAK YYYYPGFWEG
GPTLHAFCNL EKWNTLPKTY QAILVNAANT ANTWMTARYD MQNPTALKRL VAGGTQLRPF
SHDVLDACLK ATNELWGEIS ANNADFKKVI DAMQAYRSDE YLWWQVAEYT YDTFMIRSRT
RG