| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_0921 |
|---|
| Symbol | |
|---|
| ID | 3674383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | - |
|---|
| Start bp | 1007820 |
|---|
| End bp | 1009256 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637712470 |
|---|
| Product | homospermidine synthase |
|---|
| Protein accession | YP_317535 |
|---|
| Protein GI | 75675114 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG5310] Homospermidine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.126033 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.788055 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGTCGT CGAATGCTTC ATCCGTGCAC GCACGCATCA CCGGGCCGAT CGTCATGATC
GGATTCGGTT CGATCGGAAA AGGCGCCCTT CCGCTGATCG AGAAGCATTT CGAGTTCGAT
ATAGCGCGCT TTGTCATCAT CGATCCTCAT GCGGATGACA CGCTGGCAAA AAAACACGGC
GTCAAATTCA TCAGGCAAGC CATCACCCGC GACAACTATC GTGACGTCCT CGTTCCGCTG
CTGACGGAAG GCGGCGGCCG GGGCTTCTGC GTCAACCTCT CGGTCGACAC CGGTTCGGTC
GATCTCATGA CCATGTGCCG CGAGATCGGA TCCCTCTACA TCGACACCGT GGTCGAGCCG
TGGCTCGGGT TTTATTTCGA CAAGAGCGCC GGCCCCGAAA AGCGTTCCAA TTACGCGCTG
CGCGAAACGT TGCTCGCAGC CAAGCGGAAG AGCGAAGGCG GCACCACCGC GGTTTCAACC
TGCGGCGCCA ACCCCGGCAT GGTCTCCTGG TTCGTGAAGC AGGCGCTGCT CGACATCGCG
CGCGATACCG GCACCGAGTT CAACGAACCG AAGAGCCGCG AGGGCTGGGC TCAGCTCGCG
CACAAGCTCG GCGTCAAGGG CATCCACATC GCCGAGCGCG ACACCCAGCG CGCCAGGACG
CCGAAGCCGA TGAACGTGTT CGTCAACACC TGGTCGGTGG AAGGATTCGT TTCGGAAGGC
CTGCAACCTT CCGAACTCGG CTGGGGCACC CATGAAAAGT GGATGCCGGA AAACGGCCGC
AAGCACGACA CCGGATGTCA GGCCGCGATC TATCTGCTGC AACCAGGAGC CAATACCCGC
GTGCGCACAT GGTGTCCGAC GCCGGGAGCG CAGTACGGCT TTCTGGTCAC CCACAACGAA
GCGATCTCGA TCGCCGACTA CCTCACCGTT CGCGACGGCC AGAGCGTGAT CTATCGTCCG
ACCTGCCACT ACGCCTATCA TCCCGCCAAC GACGCCGTGC TGTCGCTGCA CGAGATGTTC
GGCGCGGAAG GCAAGGCGCA GCCGAAGTTT CACATTCTGG AGGAAACCGA AATCGTCGAC
GGCATCGACG AGCTCGGCGT GCTGATCTAC GGCCACGGCA AGAACGCCTA CTGGTACGGC
TCGCAGCTTT CGATCGAGGA AACCCGCCGC GTTGCGCCAT ATCAGAACGC CACCGGCCTG
CAGGTGTCAT CAGCGGTGCT GGCCGGCATG GTCTGGGCGC TGGAAAATCC GGAAGCCGGC
ATCGTCGAGG CCGACGAAAT GGACTTCCGC CGCTGTCTGG AAATCCAGCG TCCCTATCTC
GGTCCTGTGA AAGGCTATTA CACCGACTGG ACACCGCTGA CCGATCGTCC CGGACTCTTT
CCGGAGGACA TCGACACATC CGATCCGTGG CAGTTCAGGA ACGTTCTGGT TCGATGA
|
|---|
| Protein sequence | MMSSNASSVH ARITGPIVMI GFGSIGKGAL PLIEKHFEFD IARFVIIDPH ADDTLAKKHG
VKFIRQAITR DNYRDVLVPL LTEGGGRGFC VNLSVDTGSV DLMTMCREIG SLYIDTVVEP
WLGFYFDKSA GPEKRSNYAL RETLLAAKRK SEGGTTAVST CGANPGMVSW FVKQALLDIA
RDTGTEFNEP KSREGWAQLA HKLGVKGIHI AERDTQRART PKPMNVFVNT WSVEGFVSEG
LQPSELGWGT HEKWMPENGR KHDTGCQAAI YLLQPGANTR VRTWCPTPGA QYGFLVTHNE
AISIADYLTV RDGQSVIYRP TCHYAYHPAN DAVLSLHEMF GAEGKAQPKF HILEETEIVD
GIDELGVLIY GHGKNAYWYG SQLSIEETRR VAPYQNATGL QVSSAVLAGM VWALENPEAG
IVEADEMDFR RCLEIQRPYL GPVKGYYTDW TPLTDRPGLF PEDIDTSDPW QFRNVLVR
|
|---|
| |