| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_0353 |
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| Symbol | ligD |
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| ID | 3674907 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter winogradskyi Nb-255 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007406 |
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| Strand | - |
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| Start bp | 394743 |
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| End bp | 397484 |
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| Gene Length | 2742 bp |
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| Protein Length | 913 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637711893 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_316972 |
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| Protein GI | 75674551 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.344654 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCTCGC GAAAACTGAG CACCTATCGC AACAAGCGTG ACTTCTCAAA AACCGCCGAG
CCCAGCGGCG GGGCGCGCAT CGCGCCCGCA AGGCAGCGGC GATTCGTGAT TCAGAAGCAC
GACGCCACCC GACTGCATTA CGACTTCCGC CTTGAGTATG ATGGGGTCTT CAAATCCTGG
GCGGTGACGC GCGGTCCCTC GCTCGATCCG GCCGTGAAGC GGCTGGCCGT CGAGGTCGAG
GATCATCCGC TCGACTACGG CGACTTCGAA GGCACCATTC CGAAAGGCCA GTATGGCGGC
GGCACCGTGG CGATCTGGGA TCGCGGCTAC TGGTACGCCG ACGATCCGGC CAAGGGCCTC
GCCAAGGGCG ACCTCAAATT CGCGCTGATG GGCGAGAAGC TCAGAGGCGA ATGGGTGCTG
GTGCGCATGA AGAACGACCG CAGCGGCGGA AAGCGCACCA ACTGGCTGCT GATCAAGCAC
CGCGACGATT ACGCCAGGCC GGGTGACGGC GAGGATGTGC TGAAACAGGA TCGTTCGGTT
GCATCGAACC GGACCCTTGA ACAGATCGCC GAAGGCAAGG GCAAGGCGCC GGAGCCTTTC
ATGATGACCC GGCGGATCGC GGGTTCGGAT GCGGTTTGGG ATTCGAACAA GGGAGTCGCA
GCAAGAGCGC GCGCCAGGGC AGAGAGGCGG CCGGCAAAGG CGAGCGCACA ACCCGCTTCA
ACCGGCAAGA CGACGCTGAA GGAAAGCAGA CCACAAACCG CCAGGGCTCA CGCGATCAAA
AGCAAGATGC CGGACTTCGC GGGACTTCAG CTTTGCGAAG CGGCAACGCG CCCGCCGTCG
GCGGATAGCT GGGTGCATGA GATCAAACTC GACGGCTATC GCATCCAGAT GCGGATCGAG
AGCGGCGCGG TCACGCTCAG AACCCGCAAG GGACTTGACT GGACCGACAG GTTTCCAGCC
ATCGCGAAGG CGGCCGCGAA GTTGCCGGAC GCCCTCATCG ACGGCGAGAT CGTCGCGCTG
AACGCCAATG GCGATCCGGA TTTCCCGGCG ATGCAGGCCG CGCTGGCCGA AGGCAGGACG
GATGCGCTGG TGTACTTCGC GTTCGACCTG CTGTTTACGG AAGGTGAGGA TCTACGCCCG
CTGCCGCTGC TGGCGCGCAA GGACCAGCTT CGCAAATTGC TGGGACGCTC TGCGAAATCG
AACCGCGCAA CGATCCGCTA TGTGGAGCAT TTCGACGTGG ACGGCGAACA GATGCTGGCA
ACGGCGCGCG AGTCCGGCCT CGAGGGCATC ATCTCCAAAC GCATCGACGC GGCCTATCGC
GCCGGCCGCC GCGGCAGTTG GCTCAAGACC AAGAGCCGCC CCGGCCATGA GGTCGTGATC
GGCGGCTGGA AAACAACAGG CGACAAATTC CGCTCGCTGA TGGCCGGCGT CCATAACGGC
GACCGCCTCG TCTATACCGG CATCGTCGGC ACCGGCTACG GCCGCGACAC CGTGAAACGC
ATCATGCCGG CGCTGAAGGC GGCGGCCGCA TCGAAAAGTC CGTTCTCCGG CAAGAACGCG
CCGGCCGGCG GCCGCGACGT CCATTGGCTG AAGCCCGAAC TCGTCGCCGA GATCGAATTC
GCCGGCTGGA CCGATGACGG CATGGTCCGG CAAGCCGCCT TCAAGGGACT GCGCGCGGAC
AAGCCGGCGC GCGAGGTCAC GGCGGAGATG CCGACCCGTG CGGCGGCCTT AAAGCTCGAC
AAGGCGAGGC CGAAGGCCAC ACGGCCCGGC ACGAGAGCCG CCGCCGCCGC ACGCTCTGAC
CCGACGACAT CGCGGCAGTC TCGCACGTCT GCGGCGCGCG ATCGCTCGAC GGTGATGGGC
GTTGCGATCT CGCATCCGGA TAAAGCGCTG TGGCCAGACG CAGGCGACAA GCGGCCGGTC
ACCAAGCACG ATCTTGCCGC CTACATGGAG GCCGTGGGCG GCTGGATGAT CGGCCACATC
CGCGGACGGC CGTGTTCGAT CGTGCGCGCG CCGGACGGCA TCCACAGTGA GACCTTCTTC
CAGCGCCACG CCATGCCGGG CCTGTCTGAT CTGGTCACGC AGGCGAAGGT GTCAGACGAC
CGGAAGCCTT ATCTGCAGAT CGACCGCGTC GAGGCGCTGG CGGCGGTGGC GCAGATCGGC
GGCATCGAAC TGCATCCGTG GAATTGCGCG CCAGACGAAT ATACGGTGCC TGGGCGGCTG
GTCTTCGACC TCGACCCCGC GCCGGATGTC GCATTTCCCG ACGTGATCGC CGCAGCGAGG
GAAATGAGGC AGCGGCTGGA GGCGCTCAAG CTCGAAAGCT TCTGCAAGAC CACCGGCGGC
AAGGGCCTGC ACGTCGTCAC GCCGCTTGCA ATCGGGCCCA AAGACGGATT GAACTGGAAG
CAGGCCAAAA TGTTCGCCCA GGCCGTCTGC GAACAAATGG CCGCTGACGC ACCCGACAAG
TATCTCATCA ACATGTCGAA GAAGCAGCGC GAGGGTAAGA TCTTTCTCGA TTATCTTCGC
AACGACACCA AATCGACCGC GGTCGCGCCG CTGTCGCCGC GCGCGCGTCC CGGCGCTACC
GTATCCATGC CGCTGAACTG GGCGCAGGTA AAAACCGGCC TCGATCCGAA ACGCTTCACG
CTCCGCACCG CGCCCGACCT TCTGAAAAAG AGCAAGGCAT GGGCGGACTA TGACAGCGCC
GCGCGCCCGC TCGCCGCCGC GATCGGCAGG CTGGTGCGAT GA
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| Protein sequence | MPSRKLSTYR NKRDFSKTAE PSGGARIAPA RQRRFVIQKH DATRLHYDFR LEYDGVFKSW
AVTRGPSLDP AVKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVAIWDRGY WYADDPAKGL
AKGDLKFALM GEKLRGEWVL VRMKNDRSGG KRTNWLLIKH RDDYARPGDG EDVLKQDRSV
ASNRTLEQIA EGKGKAPEPF MMTRRIAGSD AVWDSNKGVA ARARARAERR PAKASAQPAS
TGKTTLKESR PQTARAHAIK SKMPDFAGLQ LCEAATRPPS ADSWVHEIKL DGYRIQMRIE
SGAVTLRTRK GLDWTDRFPA IAKAAAKLPD ALIDGEIVAL NANGDPDFPA MQAALAEGRT
DALVYFAFDL LFTEGEDLRP LPLLARKDQL RKLLGRSAKS NRATIRYVEH FDVDGEQMLA
TARESGLEGI ISKRIDAAYR AGRRGSWLKT KSRPGHEVVI GGWKTTGDKF RSLMAGVHNG
DRLVYTGIVG TGYGRDTVKR IMPALKAAAA SKSPFSGKNA PAGGRDVHWL KPELVAEIEF
AGWTDDGMVR QAAFKGLRAD KPAREVTAEM PTRAAALKLD KARPKATRPG TRAAAAARSD
PTTSRQSRTS AARDRSTVMG VAISHPDKAL WPDAGDKRPV TKHDLAAYME AVGGWMIGHI
RGRPCSIVRA PDGIHSETFF QRHAMPGLSD LVTQAKVSDD RKPYLQIDRV EALAAVAQIG
GIELHPWNCA PDEYTVPGRL VFDLDPAPDV AFPDVIAAAR EMRQRLEALK LESFCKTTGG
KGLHVVTPLA IGPKDGLNWK QAKMFAQAVC EQMAADAPDK YLINMSKKQR EGKIFLDYLR
NDTKSTAVAP LSPRARPGAT VSMPLNWAQV KTGLDPKRFT LRTAPDLLKK SKAWADYDSA
ARPLAAAIGR LVR
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