Gene Nwi_0059 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNwi_0059 
Symbol 
ID3676498 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter winogradskyi Nb-255 
KingdomBacteria 
Replicon accessionNC_007406 
Strand
Start bp70241 
End bp71224 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content64% 
IMG OID637711594 
Productpeptidase S49, SppA 
Protein accessionYP_316679 
Protein GI75674258 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID[TIGR00706] signal peptide peptidase SppA, 36K type 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0430254 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.117031 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGATGT CGATGGAATC CGACATGATC GTCGATCGTC GCAGGCTGCG CCGCAAGCTC 
ACCTTCTGGC GCGTGGCGTC GGCTTTGATC GTGATCGGCG CGGTCGTCGC GCTCGGCGCT
TACGCCTCGC CTTTGGGCGG CAGGCTGACA GGCTCTTCCG CGATCCAGCG CGTCAACATC
GACGGTCTGA TCCGCAGCGA TCAGAAGCGG GTCGAGGCCC TGGAGCGGCT TGGAAAGTCG
AAGGCGCCGG CGGTCATCGT CCACATCAAC TCGCCGGGCG GCACCACCGC CGGGTCGGAA
GAGCTTTATG AGGCCCTGAC GCGCCTGAAG GCCAAAAAAC CGATGGTCGT GGTGGTGGAA
GGGCTCGGCG CGTCGGGCGG ATATATCGCC GCGCTTGCCT CCGATCACAT CGTCGCGCAG
CAAACCGCGC TGGTCGGCTC GATCGGCGTG CTGTTTCAGT ATCCGAACGT CACCGAACTT
CTGAAAACGG TCGGGGTCAA GGTGGAGGCG GTGAAATCCT CGCCGCTGAA GGCGGCCCCG
AGCGGATATG AACCGACCAG TCCGGAAGCA CGGGCCGCGA TCGACGCCCT GGTGAAGGAT
TCCTTCGCCT GGTTTCGCGG TCTGGTGCAG AACAGGCGCG GCATGGACGA TGCGCAGCTC
GAGAAGGTCG CCGACGGGCG CGTTTTCACC GGACGGCAGG CGCTGGATCT CAAGTTGATC
GATCAGCTTG GCGACGAAAA GGTCGCGATC GCCTGGCTTG TGGCGGAAAA GAAAGTCGCG
CCCGACCTTC CGGTGCGCGA TTTCAAGTTG ACGCCGCGCT TCACTGATCT GACCTTCATC
CGCACCGCTG CGTCGGTGGC GTTTGACGCG CTGGGATTGG GCAGTATTGC GCGGCAGGTC
GAGCAGGCCG GGATCGTGCG AGCGGCGGAT CGCCTGAATC TCGACGGAAT GCTGGCGCTT
TGGCATCCCG CGCCGTCGAA TTGA
 
Protein sequence
MSMSMESDMI VDRRRLRRKL TFWRVASALI VIGAVVALGA YASPLGGRLT GSSAIQRVNI 
DGLIRSDQKR VEALERLGKS KAPAVIVHIN SPGGTTAGSE ELYEALTRLK AKKPMVVVVE
GLGASGGYIA ALASDHIVAQ QTALVGSIGV LFQYPNVTEL LKTVGVKVEA VKSSPLKAAP
SGYEPTSPEA RAAIDALVKD SFAWFRGLVQ NRRGMDDAQL EKVADGRVFT GRQALDLKLI
DQLGDEKVAI AWLVAEKKVA PDLPVRDFKL TPRFTDLTFI RTAASVAFDA LGLGSIARQV
EQAGIVRAAD RLNLDGMLAL WHPAPSN