Gene Tbd_2428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_2428 
Symbol 
ID3673938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp2496538 
End bp2499402 
Gene Length2865 bp 
Protein Length954 aa 
Translation table11 
GC content67% 
IMG OID637711134 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_316186 
Protein GI74318446 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.993227 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCTCG TCCTGCTGGT CCTGTTGAGT CTGTGCGGTC CGTGGGCGAC GGCGGCCGCG 
CCGACCCCGG TCTTCGTTCT TCATGCCTAC AGCCAGGAAT ACCCGTGGAC GCGCGGCCAG
CACGCCGGGT TCGTTGCCGC CCTCGACGCT GACCGCGCGC GGGCCTACTC GCTGAGTGTC
GAATATCTCG ACAGCAAGCG CGCCGCCTAC ACGCCCGAAT ACGCGAGCCT CGTCGCCGAT
CACCTGCGCG AGAAGTATCG CGGCTACCAG CCGGCGGCGA TTTACGTCAC CGACGACAAC
GCGCTGAGCT TCGCGCGCGC GCATCTGGGC TCGGTGTTCC CCGGGGCGCC GGTTTTTTTC
TCCGGCGTGA ACGACGCGAA CGTCCGCGCG CAGCTCGACC CCGTGAAAAT CACCGGCGTG
TTCGAAGACA AGGCGATCGG CCCCAACCTG CGGCTGATGC GCGAGTTCGA TCCCGGGGCC
CGCGATATCG TCGTCGTCGG CGACGCAAGC GAGACCTACC GGGCGATCGA AGACGAGATC
AAACAGGCGT TGCGCGCCTA TCCTGACATC CGTGCGACCT TCATTTCTGC GAGTCGCATC
GACGACGTCG TCGCGCGGCT TCGCACGCGC CGCGAGCGTT TCGTGTTCCT GACGACGCTC
GGCGCGTTCA CGGGTGCCGA CGGCGGCACG CAGACGCTGC CCGAGACCGT CGCGGCGATC
GTCGGCGCGG GGCGCTTCTT CGTATTCAGC ATGGAGGACG CGTACCTCTA TCCGGGGGTG
CTCGGCGGTT TCGTGACGAG CGGGCCGAGC CAGGGGCACA GCGCCGCCGA ACTGCTCATC
CGTCACCTCG ACGGGATGGC GATGCGCGCG TTGCCACCGA TCGAGCGCAG CCCCAACGAA
TACCTCCTCG ACGCAGCCGA ATTGCGCAAG GCCGGCCTCG TGCTTCCGCG CGCGCTGCGG
GACGACGTGA GGCTGATCAA CGCCGCGCCG ACCTTCTACG AAGCGAACCG TCCGGTTATC
CTCGGGTCGC TCTTCGTCGC CGTGGTCCTG CTTCTGATCA GCCTGGTGTT GCTGCTCCTG
CTGTTCGCCA GGAAGAATCG GCAGATCGCA CTGGCTTCGC GGCAGCTCGG CGAGACCAAG
GACAGTCTCG ACCGCGCCCA GCGCATCGCC CAGATGGGAA ACTGGGACTG GTACATCGCC
GAAAATCGCC TGTTCTGGTC GGAGGGCATC TACCGGCTGT TCGGGCTGCG GCAAGGCCAG
TTCGAGGCGA GCTACGAAGC CTTTCTGGTG CGCGTGTATC CGTCCGACCG GGCCGCGGTC
GACGCCGCGG TCCAGCGTGC GCTGAACACC GGCGCGCCCT ACGCGCTCGA CCACCGCATC
GTGCGGCCGG ACGGCAGTGT GCGCGTGGTG CATGAAACCG GCGAAGTTCT GCTCGACGCG
CTGGGCAAGC CGAGTCGCAT GATCGGGACG GTGCAGGACG TCACGCACTG GCGGGAAGCC
GAGCAGGCGC TGCGAGAGAA AGACGCGCAT CTCGAACATG TCGCCTATCA CGATCCCCTG
ACCGACCTGC CGAACCGCGC GCTGCTGCTC GACCGGCTGC GCGCCGCGGT CAGCCGCAAC
GGCCGCACGG GTGGCCGCCT CGCCGTCGTC TTCATCGATC TCGACCGCTT CAAGACGATC
AACGACAGTC TCGGTCACGC CGTGGGCGAC GCGGTCCTGC AGGCCGCTGC GAGCCGCCTC
AGGAGCCTGA CCCGCGACGG CGACACGCTC GCCCGCCTGG GCGGCGACGA ATTCGTGCTG
CTGCTCGACG GTCTGCGCGA CAACGCGGCG GCCGGCGCCG TCGCTGAAAA AATCATCACT
GCGCTCGAGA GGATGCTGCA CGTCGGAAGC TATCCGCTGC ACATCTCGGC GAGCATCGGC
ATCAGCCTCT ACCCGGAGGA CGGCCGGGAC GCCGAAGCGC TTCTGCGGCA CGCGGATGCG
GCAATGTACA AATCCAAGGA ACGCGGGCGC AACACCTTCC ATTTCTACGA ACACGGCATC
ACCGAGCGGG CGATGCGTCG CCTCCAGCTC GAGTCGCGGC TGCGCCGCGC GTTCGACGAC
CGCACACTGC AAGTCCACTA CCAGCCGCTC GTCCGCCTCG ACACCGGACA CATCTGCGGC
GCCGAGGCGC TTCTGCGCTG GAACGACCCG GAAGCCGGCG CGATCCCGCC CGATCACTTC
ATCGCGCTCG CCGAGGACAC CGGCCTGATC GTCCCGATCG GCGAGTGGGT CGTCGGCGAA
GCGTGCGAGG CCTTGAAACG CTGGGAAACC GAGATACTGC TGCCTGCGGA TTTCGCGCTC
CACGTCAACC TGTCGGGCAA GCAGTTGCTG CAGAAAGATT TGCCGACGCG CCTGTCGGAC
GCGTTCACAC GCGCCGGCGT CTCGCCCGCA CGCGTCGTGC TCGAGCTGAC CGAGAGCAGC
ATCATGGAAA GCGAGGCGAC CGGGGTCGCC GTGATGACGG CACTGCGCGA ATTCGGCGTC
GAGATCGCGA TCGACGATTT CGGCACGGGT CATTCCTCGC TGAGCCGCCT CAAGCTCCTG
CCGATCAGCG AACTCAAGAT CGACCGCAGC TTCATTCGCG ACATCGCGGT CGATTCCGAC
GATGCAGCGA TCGTCCAGGC GATTCTCGCG CTGTCGGCCA AGCTCGGGCT CGGCGTCATC
GCCGAGGGCG TCGAGCATGC CGAGCAGGAA GCTTTTCTCA TGCAGCACGG CTGCCTGCGC
GCACAGGGCT ACCGCTACGC ACGACCCATG CCGGAGGACG AACTGATTCG CCTGCTCGTC
GACGCGCCTT CGCTTGCGCT GCGCGAGACC GTCGATACCG ACTGA
 
Protein sequence
MRLVLLVLLS LCGPWATAAA PTPVFVLHAY SQEYPWTRGQ HAGFVAALDA DRARAYSLSV 
EYLDSKRAAY TPEYASLVAD HLREKYRGYQ PAAIYVTDDN ALSFARAHLG SVFPGAPVFF
SGVNDANVRA QLDPVKITGV FEDKAIGPNL RLMREFDPGA RDIVVVGDAS ETYRAIEDEI
KQALRAYPDI RATFISASRI DDVVARLRTR RERFVFLTTL GAFTGADGGT QTLPETVAAI
VGAGRFFVFS MEDAYLYPGV LGGFVTSGPS QGHSAAELLI RHLDGMAMRA LPPIERSPNE
YLLDAAELRK AGLVLPRALR DDVRLINAAP TFYEANRPVI LGSLFVAVVL LLISLVLLLL
LFARKNRQIA LASRQLGETK DSLDRAQRIA QMGNWDWYIA ENRLFWSEGI YRLFGLRQGQ
FEASYEAFLV RVYPSDRAAV DAAVQRALNT GAPYALDHRI VRPDGSVRVV HETGEVLLDA
LGKPSRMIGT VQDVTHWREA EQALREKDAH LEHVAYHDPL TDLPNRALLL DRLRAAVSRN
GRTGGRLAVV FIDLDRFKTI NDSLGHAVGD AVLQAAASRL RSLTRDGDTL ARLGGDEFVL
LLDGLRDNAA AGAVAEKIIT ALERMLHVGS YPLHISASIG ISLYPEDGRD AEALLRHADA
AMYKSKERGR NTFHFYEHGI TERAMRRLQL ESRLRRAFDD RTLQVHYQPL VRLDTGHICG
AEALLRWNDP EAGAIPPDHF IALAEDTGLI VPIGEWVVGE ACEALKRWET EILLPADFAL
HVNLSGKQLL QKDLPTRLSD AFTRAGVSPA RVVLELTESS IMESEATGVA VMTALREFGV
EIAIDDFGTG HSSLSRLKLL PISELKIDRS FIRDIAVDSD DAAIVQAILA LSAKLGLGVI
AEGVEHAEQE AFLMQHGCLR AQGYRYARPM PEDELIRLLV DAPSLALRET VDTD