Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_2428 |
Symbol | |
ID | 3673938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | - |
Start bp | 2496538 |
End bp | 2499402 |
Gene Length | 2865 bp |
Protein Length | 954 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637711134 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_316186 |
Protein GI | 74318446 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.993227 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCTCG TCCTGCTGGT CCTGTTGAGT CTGTGCGGTC CGTGGGCGAC GGCGGCCGCG CCGACCCCGG TCTTCGTTCT TCATGCCTAC AGCCAGGAAT ACCCGTGGAC GCGCGGCCAG CACGCCGGGT TCGTTGCCGC CCTCGACGCT GACCGCGCGC GGGCCTACTC GCTGAGTGTC GAATATCTCG ACAGCAAGCG CGCCGCCTAC ACGCCCGAAT ACGCGAGCCT CGTCGCCGAT CACCTGCGCG AGAAGTATCG CGGCTACCAG CCGGCGGCGA TTTACGTCAC CGACGACAAC GCGCTGAGCT TCGCGCGCGC GCATCTGGGC TCGGTGTTCC CCGGGGCGCC GGTTTTTTTC TCCGGCGTGA ACGACGCGAA CGTCCGCGCG CAGCTCGACC CCGTGAAAAT CACCGGCGTG TTCGAAGACA AGGCGATCGG CCCCAACCTG CGGCTGATGC GCGAGTTCGA TCCCGGGGCC CGCGATATCG TCGTCGTCGG CGACGCAAGC GAGACCTACC GGGCGATCGA AGACGAGATC AAACAGGCGT TGCGCGCCTA TCCTGACATC CGTGCGACCT TCATTTCTGC GAGTCGCATC GACGACGTCG TCGCGCGGCT TCGCACGCGC CGCGAGCGTT TCGTGTTCCT GACGACGCTC GGCGCGTTCA CGGGTGCCGA CGGCGGCACG CAGACGCTGC CCGAGACCGT CGCGGCGATC GTCGGCGCGG GGCGCTTCTT CGTATTCAGC ATGGAGGACG CGTACCTCTA TCCGGGGGTG CTCGGCGGTT TCGTGACGAG CGGGCCGAGC CAGGGGCACA GCGCCGCCGA ACTGCTCATC CGTCACCTCG ACGGGATGGC GATGCGCGCG TTGCCACCGA TCGAGCGCAG CCCCAACGAA TACCTCCTCG ACGCAGCCGA ATTGCGCAAG GCCGGCCTCG TGCTTCCGCG CGCGCTGCGG GACGACGTGA GGCTGATCAA CGCCGCGCCG ACCTTCTACG AAGCGAACCG TCCGGTTATC CTCGGGTCGC TCTTCGTCGC CGTGGTCCTG CTTCTGATCA GCCTGGTGTT GCTGCTCCTG CTGTTCGCCA GGAAGAATCG GCAGATCGCA CTGGCTTCGC GGCAGCTCGG CGAGACCAAG GACAGTCTCG ACCGCGCCCA GCGCATCGCC CAGATGGGAA ACTGGGACTG GTACATCGCC GAAAATCGCC TGTTCTGGTC GGAGGGCATC TACCGGCTGT TCGGGCTGCG GCAAGGCCAG TTCGAGGCGA GCTACGAAGC CTTTCTGGTG CGCGTGTATC CGTCCGACCG GGCCGCGGTC GACGCCGCGG TCCAGCGTGC GCTGAACACC GGCGCGCCCT ACGCGCTCGA CCACCGCATC GTGCGGCCGG ACGGCAGTGT GCGCGTGGTG CATGAAACCG GCGAAGTTCT GCTCGACGCG CTGGGCAAGC CGAGTCGCAT GATCGGGACG GTGCAGGACG TCACGCACTG GCGGGAAGCC GAGCAGGCGC TGCGAGAGAA AGACGCGCAT CTCGAACATG TCGCCTATCA CGATCCCCTG ACCGACCTGC CGAACCGCGC GCTGCTGCTC GACCGGCTGC GCGCCGCGGT CAGCCGCAAC GGCCGCACGG GTGGCCGCCT CGCCGTCGTC TTCATCGATC TCGACCGCTT CAAGACGATC AACGACAGTC TCGGTCACGC CGTGGGCGAC GCGGTCCTGC AGGCCGCTGC GAGCCGCCTC AGGAGCCTGA CCCGCGACGG CGACACGCTC GCCCGCCTGG GCGGCGACGA ATTCGTGCTG CTGCTCGACG GTCTGCGCGA CAACGCGGCG GCCGGCGCCG TCGCTGAAAA AATCATCACT GCGCTCGAGA GGATGCTGCA CGTCGGAAGC TATCCGCTGC ACATCTCGGC GAGCATCGGC ATCAGCCTCT ACCCGGAGGA CGGCCGGGAC GCCGAAGCGC TTCTGCGGCA CGCGGATGCG GCAATGTACA AATCCAAGGA ACGCGGGCGC AACACCTTCC ATTTCTACGA ACACGGCATC ACCGAGCGGG CGATGCGTCG CCTCCAGCTC GAGTCGCGGC TGCGCCGCGC GTTCGACGAC CGCACACTGC AAGTCCACTA CCAGCCGCTC GTCCGCCTCG ACACCGGACA CATCTGCGGC GCCGAGGCGC TTCTGCGCTG GAACGACCCG GAAGCCGGCG CGATCCCGCC CGATCACTTC ATCGCGCTCG CCGAGGACAC CGGCCTGATC GTCCCGATCG GCGAGTGGGT CGTCGGCGAA GCGTGCGAGG CCTTGAAACG CTGGGAAACC GAGATACTGC TGCCTGCGGA TTTCGCGCTC CACGTCAACC TGTCGGGCAA GCAGTTGCTG CAGAAAGATT TGCCGACGCG CCTGTCGGAC GCGTTCACAC GCGCCGGCGT CTCGCCCGCA CGCGTCGTGC TCGAGCTGAC CGAGAGCAGC ATCATGGAAA GCGAGGCGAC CGGGGTCGCC GTGATGACGG CACTGCGCGA ATTCGGCGTC GAGATCGCGA TCGACGATTT CGGCACGGGT CATTCCTCGC TGAGCCGCCT CAAGCTCCTG CCGATCAGCG AACTCAAGAT CGACCGCAGC TTCATTCGCG ACATCGCGGT CGATTCCGAC GATGCAGCGA TCGTCCAGGC GATTCTCGCG CTGTCGGCCA AGCTCGGGCT CGGCGTCATC GCCGAGGGCG TCGAGCATGC CGAGCAGGAA GCTTTTCTCA TGCAGCACGG CTGCCTGCGC GCACAGGGCT ACCGCTACGC ACGACCCATG CCGGAGGACG AACTGATTCG CCTGCTCGTC GACGCGCCTT CGCTTGCGCT GCGCGAGACC GTCGATACCG ACTGA
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Protein sequence | MRLVLLVLLS LCGPWATAAA PTPVFVLHAY SQEYPWTRGQ HAGFVAALDA DRARAYSLSV EYLDSKRAAY TPEYASLVAD HLREKYRGYQ PAAIYVTDDN ALSFARAHLG SVFPGAPVFF SGVNDANVRA QLDPVKITGV FEDKAIGPNL RLMREFDPGA RDIVVVGDAS ETYRAIEDEI KQALRAYPDI RATFISASRI DDVVARLRTR RERFVFLTTL GAFTGADGGT QTLPETVAAI VGAGRFFVFS MEDAYLYPGV LGGFVTSGPS QGHSAAELLI RHLDGMAMRA LPPIERSPNE YLLDAAELRK AGLVLPRALR DDVRLINAAP TFYEANRPVI LGSLFVAVVL LLISLVLLLL LFARKNRQIA LASRQLGETK DSLDRAQRIA QMGNWDWYIA ENRLFWSEGI YRLFGLRQGQ FEASYEAFLV RVYPSDRAAV DAAVQRALNT GAPYALDHRI VRPDGSVRVV HETGEVLLDA LGKPSRMIGT VQDVTHWREA EQALREKDAH LEHVAYHDPL TDLPNRALLL DRLRAAVSRN GRTGGRLAVV FIDLDRFKTI NDSLGHAVGD AVLQAAASRL RSLTRDGDTL ARLGGDEFVL LLDGLRDNAA AGAVAEKIIT ALERMLHVGS YPLHISASIG ISLYPEDGRD AEALLRHADA AMYKSKERGR NTFHFYEHGI TERAMRRLQL ESRLRRAFDD RTLQVHYQPL VRLDTGHICG AEALLRWNDP EAGAIPPDHF IALAEDTGLI VPIGEWVVGE ACEALKRWET EILLPADFAL HVNLSGKQLL QKDLPTRLSD AFTRAGVSPA RVVLELTESS IMESEATGVA VMTALREFGV EIAIDDFGTG HSSLSRLKLL PISELKIDRS FIRDIAVDSD DAAIVQAILA LSAKLGLGVI AEGVEHAEQE AFLMQHGCLR AQGYRYARPM PEDELIRLLV DAPSLALRET VDTD
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