| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2370 |
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| Symbol | |
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| ID | 3671863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 2444025 |
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| End bp | 2445740 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637711075 |
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| Product | type IV pilus assembly protein, PilB |
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| Protein accession | YP_316128 |
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| Protein GI | 74318388 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.881077 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0893992 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCTG TAACGAACAC GAACAACCTG ACCGGGCTGG CGCGTGCGAT GGTCAACCAC
GGCTGGCTGT CCGAGCAGGA CGCCGAGGGG GTGTGGAATC GTGCGCACCA GTCCGGCGAC
TCGTTCGTGA CCGAGCTGAT CAAGGGGCGG CGCTTCAAGG CCGACCAGGT CGCCGAATTC
GCCGCGGCGT CCTTCGGCTT TCCCTATCTC GACCTCAACG CGATGGACGC CGAGAGCCTG
CCGCAAGGCC TGCTCGACCA GAAGCTGGTG CAGAAGCGGC GGGTGCTCGC GCTCTATCAG
CGCGGCAACA AGCTGTACGT GGCGACCTCC GACCCCACGC ACCTGCAAGC GCTCGACGAG
GTGAAATTCC AGACCGGGCA GGCCGTCGAA CCGGTGGTCG TCGAAGACGA CAAGCTCGGC
AAGCTGATCG AAAAGGCAGG CGAGGCCTCG GAAAGCACGA TGGCCGTGTT GAACGCCGAA
GACCTCGACC TCGATTTCGC CGACGAAGAG AGCGCCGCCG CAGTCCAGGA GACCGGCGGA
ATCGAGATCG ACGACGCCCC GGTCGTGCGC TACCTGCAGA AGATCATGCT CGACGCCATC
AACATGGGCG CCTCCGACAT CCACTTGGAG CCCTACGAGA AGTTCTACCG CATTCGCTAC
CGGCGCGACG GCATGCTGTA CGAAGTTGCT CAGCCGCCGA TGGCGATCAA GGACAAGGTC
GCGTCGCGCA TCAAGGTGCT GTCGCGTCTC GACATTTCCG AGAAGCGCGT GCCGCAGGAC
GGCCGCATGA AGTTGGTGCT GTCGAAGAAC CGCGCGATCG ATTTTCGCGT CAGCACCCTG
CCGACGCTGT ATGGCGAAAA AATCGTGATG CGTATTCTCG ACCCGAGCAG TGCGCAGCTC
GGGATCGAAG CGCTGGGTTA CGAGCCCTGG CAGAAGGATC TGCTGATGGA CGCAATCCGG
CGCCCCTATG GCATGGTGCT CGTCACCGGG CCGACCGGCT CCGGCAAGAC CGTGTCGCTC
TATACCTGCC TGAATATTCT GAACAAGCCC GACGTCAACA TTTCGACCGC CGAAGATCCG
GCCGAAATCC AGTTGCCCGG AATCAACCAG GTCAACGTCA ACGATAAGGC TGGGCTGACG
TTTTCGGCGG CGCTCAAATC CTTCCTGCGG CAGGACCCCG ACGTCATCAT GGTCGGCGAG
ATTCGCGATC TCGAAACCGC GGACATCGCG ATCAAGGCGG CGCAGACCGG ACACATGGTG
ATGTCGACGC TGCACACCAA CGATGCCCCC GGCACGCTGA CGCGTCTGCT GAACATGGGT
GTCGCGCCGT TCAACGTCGC CTCGTCGGTG ATTTTGATCA CCGCCCAGCG CCTCGGTCGA
CGTCTGTGCA GCTGCAAGCA GCCCGCCGAC GTTCCCACGG AAACCCTGCT CGCCGCAGGC
TTCACCGAGG ATCAGCTGGA CGGGACGTGG CAGCCCTACC GGCCGGTCGG GTGCGAGATA
TGCGGCGGCA GCGGCTACAA GGGCCGCGTC GGCATCTATC AGGTCATGCC GATCACCGAC
GCGATGACGC GGATCATCCT CAAGGGCGGC AACGAATCCG ACATCGCGGA CCAGGCCAAG
CGCGAAGGCG TGCTCGATTT GCGCCAGGCG GGTCTGTTGA AGGTAAAAGC CGGGCTCACC
TCGCTGGAAG AGGTCGAGGC CGTTACCAAC ATTTAA
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| Protein sequence | MAAVTNTNNL TGLARAMVNH GWLSEQDAEG VWNRAHQSGD SFVTELIKGR RFKADQVAEF
AAASFGFPYL DLNAMDAESL PQGLLDQKLV QKRRVLALYQ RGNKLYVATS DPTHLQALDE
VKFQTGQAVE PVVVEDDKLG KLIEKAGEAS ESTMAVLNAE DLDLDFADEE SAAAVQETGG
IEIDDAPVVR YLQKIMLDAI NMGASDIHLE PYEKFYRIRY RRDGMLYEVA QPPMAIKDKV
ASRIKVLSRL DISEKRVPQD GRMKLVLSKN RAIDFRVSTL PTLYGEKIVM RILDPSSAQL
GIEALGYEPW QKDLLMDAIR RPYGMVLVTG PTGSGKTVSL YTCLNILNKP DVNISTAEDP
AEIQLPGINQ VNVNDKAGLT FSAALKSFLR QDPDVIMVGE IRDLETADIA IKAAQTGHMV
MSTLHTNDAP GTLTRLLNMG VAPFNVASSV ILITAQRLGR RLCSCKQPAD VPTETLLAAG
FTEDQLDGTW QPYRPVGCEI CGGSGYKGRV GIYQVMPITD AMTRIILKGG NESDIADQAK
REGVLDLRQA GLLKVKAGLT SLEEVEAVTN I
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