Gene Tbd_2021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_2021 
Symbol 
ID3672192 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp2110294 
End bp2110983 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content68% 
IMG OID637710723 
ProductDNA-(apurinic or apyrimidinic site) lyase / endonuclease III 
Protein accessionYP_315779 
Protein GI74318039 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCTG ACAAACGCCG CGAGATTTTC CGCCGCCTGC GCGAAGCGAA TCCCCACCCG 
ACGACCGAGC TCGAATACGC GACGCCTTTC GAGCTGCTGG TCGCGGTCGT GCTCTCGGCG
CAGTCGACGG ACAAGGGCGT CAATCGCGCG ACGCGCGTGC TCTTCCCGAT CGCCAACACG
CCTGCGGCGA TCCACGCGCT CGGCGAGGCG GGGCTCGCCG ACTACATCAA GACGATCGGA
CTCTACAAAA GCAAGGCGCG GCACCTGATC GCGGCATCGC GCATGCTGCT CGACCTGCAC
GGCGGCGAAG TCCCCGCCGA CCGCGCCGCG CTCGAGGCGC TGCCCGGGGT CGGGCGCAAG
ACCGCCAACG TGATCCTCAA CACCGCGTTC GGCCAGGCGA CGATGGCGGT CGACACCCAC
ATCTTCCGCG TTGCGAACCG CACCGGCCTC GCCCCCGGGA AGACCGTGCT CGAAGTCGAA
AAAAAGCTGG TCAAGACGAC GCCCGCCGAG TTTCTGGTCG ACGCGCACCA CTGGCTGATC
CTGCACGGCC GCTACGTCTG CCAGGCGCGC AGGCCGAAGT GTGCGGAATG CATCATCGTC
GACCTCTGCG AGTTCAAGGC CAAGACCCTG CCCGCTGCGC CGCGTGCCTC CGCGCGCAAG
AGGCCCGCGA CCGAGGCGGC CGATGTTTAA
 
Protein sequence
MNADKRREIF RRLREANPHP TTELEYATPF ELLVAVVLSA QSTDKGVNRA TRVLFPIANT 
PAAIHALGEA GLADYIKTIG LYKSKARHLI AASRMLLDLH GGEVPADRAA LEALPGVGRK
TANVILNTAF GQATMAVDTH IFRVANRTGL APGKTVLEVE KKLVKTTPAE FLVDAHHWLI
LHGRYVCQAR RPKCAECIIV DLCEFKAKTL PAAPRASARK RPATEAADV