Gene Tbd_1953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_1953 
Symbol 
ID3674063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp2046487 
End bp2047851 
Gene Length1365 bp 
Protein Length454 aa 
Translation table11 
GC content65% 
IMG OID637710652 
Productdiguanylate cyclase 
Protein accessionYP_315711 
Protein GI74317971 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.363504 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.99023 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTTTTC CCCCGATAGC CGAATTGGCG ACGACCGACA TCGTGAGCGT GTCGTCGGAG 
GTCAGCGTGA GCGAGGCGTT GCGGCAGATG GCTGCGCGGA ACGTCCGCAA CATCGTGGTG
CGGCGCGGCG AGGGGAGGTA TGGGCTACTG ACCGCGCCGG ACGTCGTGAA ACTGCGTTTT
GGCGAGAAGG GCCTCGGCAT CGCGGTCGGA AACGTCGAGT GCGCGGAGCT CCCCGTCATC
CCGCAGGACT ACAACATCCT CGACATGTTC GACCAGCTCG ACGGCTCACA GGGATACGCG
GCGGTCGTCG ACGGGTCGGG CGACCTGTAC GGCATCGTTT CCAATTCGGA CATCCTGGGC
AGCCTCGATC CGCAGCTCAT GCTGCAGCGA CAGTGTCTGG GCGATCTGCT GAAGCGTCAC
GAGATCAAGA CCGTGCACGC GGCGACGCCT CTCGCGGACG TGCTCGTGCA ACTGGTCCAG
GCCGACGATG CGGTGATCGT GATCGATCAG GAGGCAGAGA TTGGCATCCT CACGACCCAG
GACGCGGTCC GTATCCTGCA GAGCGACGCG CCCTTGGCCG ACCCGGTCGC GGCGCACATG
TCCGCCCCGC TGCACACGGT TGGCCACGGC CTCACGGTGA GCGAGGCGAT CGCGACGCTG
CACGAGAAGC ATTTCAAGCG CCTCGTCGTC AGGGACAGCG ACAGCGGAAG AATCATCGGC
CTCATCACGC AGAAGGACTT GATCGGCGTC GCGTATAGCC GCTGGGCGGA CTTGATGCGA
CACCACGCAC TCGAGTTGCA GGAGGTCATC GACATCCTCG AGCGCAAGGC CGCGCGGCTC
GAGCGGATGG CGACGACGGA TGCCTTGACC GGCATTGCCA ATCGGGCCCG TTTCGAAGAA
TTGCTGCAAT TGGAGCAACA GCACTGCCTG CGCGTGCCGG GTCAGCCTTT CTCCGTCATC
CTGTTCGATA TCGATCGCTT CAAGCAGATC AACGATACCT GGGGACACGG TCAGGGGGAC
GACGTTCTCA AAACCATCGC ACGCGAGGTA CAGGGCCTGC TGCGCACGGC CGATACGCTC
GCGCGCTGGG GGGGCGAGGA ATTCGCCGTC CTGCTGCCGC GGACCGATCT CGATGCGGCT
CGCGTGGTCG CCGACAAGAT TTGCGGTGCG CTCGGGCAGG TACCGCTCGA GCGCGTCGGA
ACCGTGACAG CGAGCTTCGG TGTGGCCACG ATCGAGTCGG GAGAGCCGGG CGCGGCCCTG
CTCGCGCGCG CGGACGGCGC GCTTTACGAG GCCAAGCGCC GAGGCCGCAA TCAGGTGGTC
CAGGCGCGCG CGACGGATGA GCGCGTGGCC GATCCGGGCA GATGA
 
Protein sequence
MFFPPIAELA TTDIVSVSSE VSVSEALRQM AARNVRNIVV RRGEGRYGLL TAPDVVKLRF 
GEKGLGIAVG NVECAELPVI PQDYNILDMF DQLDGSQGYA AVVDGSGDLY GIVSNSDILG
SLDPQLMLQR QCLGDLLKRH EIKTVHAATP LADVLVQLVQ ADDAVIVIDQ EAEIGILTTQ
DAVRILQSDA PLADPVAAHM SAPLHTVGHG LTVSEAIATL HEKHFKRLVV RDSDSGRIIG
LITQKDLIGV AYSRWADLMR HHALELQEVI DILERKAARL ERMATTDALT GIANRARFEE
LLQLEQQHCL RVPGQPFSVI LFDIDRFKQI NDTWGHGQGD DVLKTIAREV QGLLRTADTL
ARWGGEEFAV LLPRTDLDAA RVVADKICGA LGQVPLERVG TVTASFGVAT IESGEPGAAL
LARADGALYE AKRRGRNQVV QARATDERVA DPGR