Gene Tbd_1880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_1880 
Symbol 
ID3673990 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp1977449 
End bp1978525 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content62% 
IMG OID637710579 
ProductCDP-glucose 4,6-dehydratase 
Protein accessionYP_315638 
Protein GI74317898 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0451] Nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID[TIGR02622] CDP-glucose 4,6-dehydratase 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.457819 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAAGATA TGGTGACGAG CCCGGACTTC TGGCAGGGCA AGCGGGTTTT TGTAACGGGT 
CACACGGGCT TCAAGGGGAG CTGGCTCTGT CTTTGGCTGC AAAGCATGGG GGCGGAGGTC
TTGGGATTTG CGCTTCCCCC CCCCACCGAT CCCAACCTGT ATGAGGCCGC CGGGGTGACC
CGCGGCATGC ATTCGCATCT GGGCGACATC CGGCAGGGCG AGGAGCTGGC ACGCGTATTG
GCGGCATCGC GGCCCGATGT CGTATTCCAT TTAGCGGCCC AGCCACTGGT CCGTCACAGC
TATACCCATC CCGTTGAAAC GTACTCCACG AATGTGATGG GAACGGTCAA TCTGCTCGAG
GCCGTGAGGC GAGCCCCGTC AGTGCGTTCC GTGGTCATCG TCACGAGCGA CAAGAGTTAC
GAAAATCGCG AATGGCCCTG GGGGTATCGC GAGATAGATC CGATGGGGGG ATACGATCCG
TACAGCAACA GCAAGGGCTG CGCGGAGCTT GTGGTTTCAG CTTACCGCAG CTCCTATTTC
AATCCGGCAA ACTACCAGGA GCATCGTGTC GCCCTGGCAT CGGCGCGGGC GGGTAATGTG
ATCGGTGGCG GCGACTGGGC TGCCGATCGG CTGGTGCCCG ACATTGTTCG TGCGGTTAGC
GTGGGGCGTC CGGTGTGGAT ACGGAATCCT CATGCCATTC GTCCGTGGCA GCACGTTCTG
GAGCCGCTCT CCGGATACCT GCTACTCGCG CAGCGCTTAT ACGAGCAGGG GCCCGCGTTT
GCACAGGGCT GGAATTTTGG TCCTGCCGAT GACGATGCGC AGCCGGTCTC CTGGATCGTC
GACCGAGTAA CCGCTCTCTG GGGGGAGGGG GCCCGCTGGG AGTTGGAAGG CGGAGAGCAT
GCGCATGAGG CGAATTATCT TCGCCTCGAC TGCTCGAAGG CGCGAGCCGA GTTGCAGTGG
CACCCGAAAT GGACGCTCGG CCAAGCCCTG GACAAGACAG TCGAGTGGTA CCGGGCAGCC
GGATCGGGCG CTGACATGCG CCCGTTCACG CTTGGCCAAA TCGAAGCCTA CCTCTGA
 
Protein sequence
MEDMVTSPDF WQGKRVFVTG HTGFKGSWLC LWLQSMGAEV LGFALPPPTD PNLYEAAGVT 
RGMHSHLGDI RQGEELARVL AASRPDVVFH LAAQPLVRHS YTHPVETYST NVMGTVNLLE
AVRRAPSVRS VVIVTSDKSY ENREWPWGYR EIDPMGGYDP YSNSKGCAEL VVSAYRSSYF
NPANYQEHRV ALASARAGNV IGGGDWAADR LVPDIVRAVS VGRPVWIRNP HAIRPWQHVL
EPLSGYLLLA QRLYEQGPAF AQGWNFGPAD DDAQPVSWIV DRVTALWGEG ARWELEGGEH
AHEANYLRLD CSKARAELQW HPKWTLGQAL DKTVEWYRAA GSGADMRPFT LGQIEAYL